Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 517 MSNNYIASITLYQPDN 564
           +SNNYI++I+ Y  DN
Sbjct: 85  LSNNYISNISNYNNDN 100


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 755 CWYEDHFFVFSG 720
           CW  +HFF + G
Sbjct: 332 CWNSEHFFEYGG 343


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 517 MSNNYIASITLYQPDN 564
           +SNNYI++I+ Y  +N
Sbjct: 85  LSNNYISNISNYNNNN 100


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 375 AVTATPPPLSTSECASDLSGWTVSSNSQR 289
           +V+  P     ++CA+D S W   ++  R
Sbjct: 156 SVSCVPSVKHVAKCATDFSSWPYDTHRCR 184


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +2

Query: 197 PGRVVRRSHQPGEEVRPAHDYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGV 364
           P + +RR    G++ +      G  +   Y  CE      P +S   + V++  GV
Sbjct: 767 PDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSVGV 822


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 517 MSNNYIASITLYQPDN 564
           +SNNYI++I+ Y  +N
Sbjct: 323 LSNNYISNISNYNNNN 338


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +2

Query: 197  PGRVVRRSHQPGEEVRPAHDYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGV 364
            P + +RR    G++ +      G  +   Y  CE      P +S   + V++  GV
Sbjct: 857  PDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSVGV 912


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 477 EPNGLVVLVEEARLSTTGRSHTRSARDTTSHLL*AVTATPPPLSTSECASDLSG 316
           EP      +     +TT  + T +   T +    A   TPPP        +LSG
Sbjct: 650 EPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELSG 703


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 707 LATPRFGVTSVTVLNVYLSDES 642
           L  P  G+T +TVL  YL  +S
Sbjct: 256 LIIPCVGITFLTVLVFYLPSDS 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,688
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)