Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1933
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   5.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.3  

>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 442 RSKFKET*NIHMYRAKQYCSTVDMIRFRIVFKSV 341
           RS F+ET  +H+Y    Y    D+ +FR +   V
Sbjct: 9   RSIFEETNQLHLYDQLNYLKKNDLQKFRKLLNQV 42


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 603 KKKLTSLFKI*NKNIGSKLLKFIRALRAV**TGLGRHQA 487
           +K LT +F   N +IG+KL  F+     V  TGL   QA
Sbjct: 472 RKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQA 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,337
Number of Sequences: 5004
Number of extensions: 45825
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)