Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1933
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   3.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.8  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 120 SNVCFLFTIKNIYWLF 167
           +N+C    + N++WLF
Sbjct: 26  NNMCTSLNLSNLFWLF 41


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 YYTIYEYYDCIISLIVSCVCY*LNK 277
           YY I  Y  C + +IVS V + L++
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQ 267


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 YYTIYEYYDCIISLIVSCVCY*LNK 277
           YY I  Y  C + +IVS V + L++
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQ 267


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 118 RQMFVFYLPSKTF 156
           RQ F F+LPSK +
Sbjct: 237 RQAFPFWLPSKEY 249


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 118 RQMFVFYLPSKTF 156
           RQ F F+LPSK +
Sbjct: 237 RQAFPFWLPSKEY 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,268
Number of Sequences: 438
Number of extensions: 2931
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)