Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1932
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...   112   5e-26
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...   109   4e-25
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    45   1e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    40   5e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    36   0.005
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    34   0.020
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    31   0.14 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    28   1.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.3  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   5.3  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   5.3  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   7.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.3  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score =  112 bits (270), Expect = 5e-26
 Identities = 47/85 (55%), Positives = 68/85 (80%)
 Frame = +1

Query: 4   EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE 183
           E  F     +++ FDVGGQRSER+KWIHCFE+VTA++F V+++ YDQ L ED + N+MQE
Sbjct: 226 EETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQE 285

Query: 184 SLKLFDSICNNKWFTDTSIILFLKR 258
           +L L+DSICN+ WF+++++ILFL +
Sbjct: 286 ALLLWDSICNSSWFSESAMILFLNK 310



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
 Frame = +3

Query: 255 KKDLFEEKIRRSPLTICFPEYTGAQEYGEAAAYIQAQ------------------FEAKN 380
           K DLF+ K+  SP+   FP+Y   QE G    ++Q Q                  FE+ N
Sbjct: 310 KLDLFKRKVHISPIQKHFPDY---QEVGSTPTFVQTQCPLADNAVRSGMYYFYLKFESLN 366

Query: 381 KSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 491
           +  ++  YCH T ATDT+ +Q V  +V D I++NNL+
Sbjct: 367 RIASRSCYCHFTTATDTSLLQRVMVSVQDTIMSNNLQ 403


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score =  109 bits (262), Expect = 4e-25
 Identities = 49/94 (52%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
 Frame = +1

Query: 4   EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET--TNRM 177
           E+ F+  +L  ++FDVGGQR+ER+KWI+CFE+V +IIFCV++++YD+ L+E      NR+
Sbjct: 184 EISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRL 243

Query: 178 QESLKLFDSICNNKWFTDTSIILFLKRRISSRKK 279
            ES+ LFDSI N++WF  +SIILFL +    RKK
Sbjct: 244 VESISLFDSIINSQWFMHSSIILFLNKFDLFRKK 277



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 KKDLFEEKIRRSPLTICFPEYTGAQEYGEAAAYIQAQFEAKNKSTTKE-IYCHMTCATDT 431
           K DLF +K+   P    FP+Y G         YI   F   + +  K  IY H+T A DT
Sbjct: 270 KFDLFRKKLEHVPFQDYFPQYEGKNSVKSITRYILWLFVNPSINRAKHNIYPHITTAVDT 329

Query: 432 NNIQFVFDAVTDVIIANNLRGCGLY 506
           +NI+ VF AV + I+ ++L+  G++
Sbjct: 330 SNIKVVFSAVKETILQHSLKEAGMF 354


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 36/63 (57%)
 Frame = +1

Query: 19  FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 198
           ++N++F ++DVGGQ   R  W H F++   IIF V  ++ +++    E   RM    +L 
Sbjct: 58  YRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELR 117

Query: 199 DSI 207
           D++
Sbjct: 118 DAL 120


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +1

Query: 16  SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 195
           ++KN+ F ++DVGGQ   R  W H F     +IF V  ++ +++    +  +R+    ++
Sbjct: 61  TYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREM 120

Query: 196 FDSI 207
            D +
Sbjct: 121 RDCL 124


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +1

Query: 22  KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 189
           + L F ++D+GGQ++ R  W + FE   AII+ V     D  L  +E  N +QE L
Sbjct: 58  EGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVV--DSLDD-LRLEECRNTLQELL 110


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 25  NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 147
           N+ F  FD+GG +  R+ W   F +V  I++ V   +++++
Sbjct: 63  NVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERL 103


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 450 TQTGCCSCR-WRTSCGSRSPSWWTC-SSLRTAPGCTRPPR 337
           T+TGC +CR  R  C  R P  + C  S R   G T  PR
Sbjct: 42  TKTGCLTCRKRRIKCDERKPICYNCIKSKRQCEGYTHFPR 81


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 712 CSLLESCNKLDTIVSGL 662
           CSLL  CN+LD + SGL
Sbjct: 146 CSLLYPCNRLDRLTSGL 162


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 58   QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 216
            +R+E  +  +CF+ + ++    ++S     L  DE  N M   L LFDS+ ++
Sbjct: 3730 KRTELPELSYCFKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLFDSLLSS 3782


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 16  SFKNLNFKLFD 48
           SFKNLNFKLFD
Sbjct: 553 SFKNLNFKLFD 563


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 413 DVRHRHEQHPVCVRRGDRRDH 475
           D  +RH+Q  +CV   DRR H
Sbjct: 513 DALNRHKQRNICVGGVDRRQH 533


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 162 FILVQHLIIFRHGNTEYDRGHVLEAMNPFL 73
           FIL   L+IF  G TE  R ++ +A + F+
Sbjct: 251 FILAPELVIFSAGETEAPRRNIPKATSRFI 280


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 SEEQVHHEGDLLPHDVRHRHEQH 439
           S++ +HHEG    H   H H  H
Sbjct: 290 SDKDLHHEGHHHHHHHHHHHHSH 312


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/41 (19%), Positives = 20/41 (48%)
 Frame = +1

Query: 88  CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 210
           CF  +  +  C A + + +++HE   +  + ++ K    +C
Sbjct: 383 CFNSMNPLTKCAAQTSWIRLIHEFSLSETLTQATKRLTLLC 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,897
Number of Sequences: 5004
Number of extensions: 57436
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)