Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1931
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    55   1e-08
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.3  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    27   3.1  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   7.2  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   7.2  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   9.5  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   9.5  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    25   9.5  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 42/80 (52%)
 Frame = +1

Query: 505 RMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKIN 684
           R+  GYR Q ++   P KGG+RF   V    +K L     FK A   +P GG K G   +
Sbjct: 60  RVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPMGGGKGGSDFD 119

Query: 685 PKEYSEHELEKITRRFTLEL 744
           PK  S++E+ + ++ F  +L
Sbjct: 120 PKGKSDNEIRRFSQAFMRQL 139


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 404 QWVSLTSNLQQAFFDNLTGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVVRQQTFTPAG 225
           Q+VSL S   Q F DN    VE + Y    +   + R + +   N+   +V   T T   
Sbjct: 466 QYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQSYTNVSNGLVFVNTTTDVN 525

Query: 224 MIRNIV 207
            + +I+
Sbjct: 526 KLPSII 531


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 453 HGSISFRIPATFFFFSSMGVLDFKSS--TSFLRQLDRLGGKNILPCGRTSDSHL*EYL*A 280
           +GS  F      FF++ MG L F  S  TSFL  L  L G  I  CG    + L +Y   
Sbjct: 61  YGSFMFSFLGRGFFYAFMGTLLFSYSGFTSFLGFLVLLAG--IAYCGANYVAGLQDYAPR 118

Query: 279 YLESHD 262
            +  +D
Sbjct: 119 SMRDND 124


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 452 CDHILEIQFPLRR 490
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +1

Query: 547 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 678
           TPT  G   ST +T   V+ALS L     ACV  P  G   GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 499 RLRMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAK 666
           R R I G + +        K G+++ + ++  E+K            VD+P GG K
Sbjct: 696 RNRRIEGSKVKKILRSLTLKQGMKYDSPISVKEIKPFIRFFDLNMNEVDMPVGGFK 751


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +1

Query: 562 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKAGIKINPKEY-SEHELEKIT 723
           GIR  T +TR  ++A  +L+   C C     VD+ F  A+ GI +    Y +   + ++ 
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYANSRSVAELV 160

Query: 724 RRFTLELAKK 753
             + + LA++
Sbjct: 161 IGYIISLARQ 170


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 556  KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 675
            KGG  F    + D   A S   T  C    +PFG    GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 634 ACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKDSLAWRGCP 780
           A +  P  G    IK   + YS++ + +IT   T+   KK  + +  CP
Sbjct: 78  AVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECP 126


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 408 SSMGVLDFKSSTSFLRQLDRLG 343
           +S+G+LDF+S   F  +L R G
Sbjct: 169 TSLGILDFRSDNGFYARLARHG 190


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 429 PATFFFFSSMGVLDFKSSTSFLRQLDRL 346
           PA+ + F+ + VLD+      LR L+RL
Sbjct: 105 PASIYTFNELVVLDYPHKDRALRYLERL 132


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 686 PKNTPSMNWKRSLVVSPLNLPKRIHWPGVDV 778
           P N P    K+ L++S L L + +   GVDV
Sbjct: 132 PSNDPKQKNKQKLMISELLLQQLLKLDGVDV 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,508
Number of Sequences: 5004
Number of extensions: 72174
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)