Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1931
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 93 3e-19
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 92 5e-19
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 90 2e-18
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 50 3e-06
06_03_1294 - 29080347-29081447 29 3.3
11_01_0311 + 2322511-2323527 28 7.5
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 7.5
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721... 28 9.9
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 92.7 bits (220), Expect = 3e-19
Identities = 48/99 (48%), Positives = 60/99 (60%)
Frame = +1
Query: 502 LRMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKI 681
L +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A VP+GGAK GI
Sbjct: 48 LATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGC 107
Query: 682 NPKEYSEHELEKITRRFTLELAKKDSLAWRGCPAPDMGT 798
P E S ELE++TR FT ++ + PAPDMGT
Sbjct: 108 TPGELSRSELERLTRVFTQKIHDLIGIN-TDVPAPDMGT 145
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 91.9 bits (218), Expect = 5e-19
Identities = 48/99 (48%), Positives = 60/99 (60%)
Frame = +1
Query: 502 LRMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKI 681
L +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A +P+GGAK GI
Sbjct: 48 LASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGC 107
Query: 682 NPKEYSEHELEKITRRFTLELAKKDSLAWRGCPAPDMGT 798
P E S ELE++TR FT ++ A PAPDMGT
Sbjct: 108 APGELSTSELERLTRVFTQKIHDLIG-AHTDVPAPDMGT 145
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 90.2 bits (214), Expect = 2e-18
Identities = 46/99 (46%), Positives = 62/99 (62%)
Frame = +1
Query: 502 LRMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKI 681
L +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A ++P+GGAK GI
Sbjct: 48 LASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGC 107
Query: 682 NPKEYSEHELEKITRRFTLELAKKDSLAWRGCPAPDMGT 798
+P + S ELE++TR FT ++ + PAPDMGT
Sbjct: 108 SPGDLSISELERLTRVFTQKIHDLIGI-HTDVPAPDMGT 145
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/95 (33%), Positives = 44/95 (46%)
Frame = +1
Query: 517 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 696
G+R Q S P +GG+RF +T K L+ T K A GGA G +PK
Sbjct: 267 GFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGK 326
Query: 697 SEHELEKITRRFTLELAKKDSLAWRGCPAPDMGTG 801
SE E+ + + F EL + + PA D+G G
Sbjct: 327 SESEIMRFCQSFMDELYRYLG-PDQDFPAEDVGVG 360
>06_03_1294 - 29080347-29081447
Length = 366
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 590 EMKLRRYQL**PSSARAWTCLSAVLRPVSRSIPKNTP-SMNW----KRSLVVSPLNLPKR 754
E LR L P++A WTC + PV+ S +TP +W R + P + P
Sbjct: 80 EKTLRTVFLSTPATAGGWTCRCSAPSPVASSSSTSTPMGSHWWWPASRRPPIIPPSCPGD 139
Query: 755 IHW 763
++W
Sbjct: 140 VYW 142
>11_01_0311 + 2322511-2323527
Length = 338
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 623 PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSLVVSPL-NLPKRIHWPGVDV-PLLTWV 796
PSS R TC S+ S S P + +++++ +L+ +P L R+ W + P L++
Sbjct: 36 PSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQLRLTWGHSPLGPTLSFA 95
Query: 797 P 799
P
Sbjct: 96 P 96
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 317 LPHGRIFFP--PSLSSCRRKLVEDLKSRTPIEEKKKKVAG 430
LP + F P P+L+ R+ + +KS P+EE++ K G
Sbjct: 645 LPRSKDFMPTFPALNEQDRRFKKHMKSPDPLEEQRMKEQG 684
>07_03_0507 -
18871260-18871361,18871444-18871560,18871792-18872120,
18872704-18872871,18873592-18873685,18873707-18873766,
18874702-18874762,18875258-18875319,18875729-18875856,
18876783-18876852,18877472-18877630
Length = 449
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 598 LHLWLRPLR-IEYLLWLESCVWNVVRDS 518
LH +LRPL + Y W+ V NV+RD+
Sbjct: 281 LHNFLRPLLFLMYSFWVPQIVTNVIRDT 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,688,352
Number of Sequences: 37544
Number of extensions: 466501
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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