Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1931
         (801 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   2.7  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    25   2.7  
EF588577-1|ABQ96772.1|  177|Anopheles gambiae transposase protein.     24   4.8  
EF588564-1|ABQ96762.1|  176|Anopheles gambiae transposase protein.     24   4.8  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   8.3  

>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 201 PQYNVPNHTSWSECLLPHYASHEIP--DKLKDIPTSANP 311
           P +NV +   W+E  L  +  H  P   ++ D PT++ P
Sbjct: 567 PAHNVRDLRLWTEVYLGSWGGHNQPSASEVADYPTASVP 605


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 201 PQYNVPNHTSWSECLLPHYASHEIP--DKLKDIPTSANP 311
           P +NV +   W+E  L  +  H  P   ++ D PT++ P
Sbjct: 567 PAHNVRDLRLWTEVYLGSWGGHNQPSASEVADYPTASVP 605


>EF588577-1|ABQ96772.1|  177|Anopheles gambiae transposase protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 150 YRQVSGSAAQEFCSK*SPQYNVPNHTSWSECLLPHYASHEIPDKLKD 290
           +  V     ++F    +P Y +P   S S  LLP   + E  +K KD
Sbjct: 123 FNLVESEIFKKFVYTLNPNYIMPTRKSLSNALLPSVYNQEF-EKAKD 168


>EF588564-1|ABQ96762.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 150 YRQVSGSAAQEFCSK*SPQYNVPNHTSWSECLLPHYASHEIPDKLKD 290
           +  V     ++F    +P Y +P   S S  LLP   + E  +K KD
Sbjct: 122 FNLVESEIFKKFVYTLNPNYIMPTRKSLSNALLPSVYNQEF-EKAKD 167


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 365 FDNLTGSVEKIFYHVEELRIR 303
           F  L  ++E +  H+EELR+R
Sbjct: 805 FTELPDTIELVDAHLEELRVR 825


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,815
Number of Sequences: 2352
Number of extensions: 17716
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)