Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1931
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   144   7e-35
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    28   8.9  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  144 bits (349), Expect = 7e-35
 Identities = 68/99 (68%), Positives = 80/99 (80%), Gaps = 1/99 (1%)
 Frame = +1

Query: 508 MILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINP 687
           +I  +RAQHS HRTPTKGGIR+S DV  DEVKALSALMT+KCA VDVPFGGAK G+KI+P
Sbjct: 109 VIEAWRAQHSEHRTPTKGGIRYSLDVCEDEVKALSALMTYKCAVVDVPFGGAKGGVKIDP 168

Query: 688 KEYSEHELEKITRRFTLELAKKDSLA-WRGCPAPDMGTG 801
           K+Y+++E+EKITRR  +E AKK  L      PAPDMGTG
Sbjct: 169 KQYTDYEIEKITRRIAIEFAKKGFLGPGVDVPAPDMGTG 207



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = +2

Query: 368 KLVEDLKSRTPIEEKKKK-VAGILKLMEPCDHILEIQFPLRRDSGDYE 508
           KL E+LKS +  ++ KK  V+GIL  ++P + +L I FP+RRD+G++E
Sbjct: 61  KLAEELKSNSLSQKDKKNLVSGILGAIKPVNKVLYITFPIRRDNGEFE 108



 Score = 32.3 bits (70), Expect = 0.42
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 258 ASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVEESL 374
           A  ++ D+ K +    NP F+ MV+++F++  +V+   L
Sbjct: 24  AHSQVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKL 62


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 133 WWLIMLSTTIGLGIGSPYTY 74
           WW I+  TTIG G  +P+TY
Sbjct: 368 WWAIVTMTTIGYGDITPHTY 387


>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 435 RIPATFFFFSSMGVLDFKSSTSFLRQLD 352
           R P T F F   GV++  S  SF+RQLD
Sbjct: 127 RKPGTVFNFCDWGVINHLSCISFIRQLD 154


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 800 PVPMSGAGHPRQANESFLASSRVKRRVIFSSSCSEYSL 687
           PVP+  A  P +  E+F  + +  R+VI S++ +E S+
Sbjct: 416 PVPLYAALRPEKQKEAFRKTPQGARKVIISTNIAETSV 453


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 142 DAAWWLIMLSTTIGLGIGSPYTY 74
           DA WW ++  TTIG G   P T+
Sbjct: 214 DALWWGVITMTTIGYGDVVPQTW 236


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 142 DAAWWLIMLSTTIGLGIGSPYTY 74
           DA WW ++  TTIG G   P T+
Sbjct: 255 DALWWGVITMTTIGYGDVVPQTW 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,111,401
Number of Sequences: 27780
Number of extensions: 401902
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)