Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1929
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   8.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   8.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.5  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 205 LYDGQLFVNVVGFCP--CVSGFSKQPRLPETSIH 110
           LY  Q+ ++  G+    C  GF++QP  P  S++
Sbjct: 117 LYHPQVLLSPGGYSGSLCDQGFAQQPMFPSMSVN 150


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 315 YSQYVATCSGPFPPLPAASCP 253
           Y  YVAT    F  +P   CP
Sbjct: 272 YLYYVATGKASFVTVPMIVCP 292


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 315 YSQYVATCSGPFPPLPAASCP 253
           Y  YVAT    F  +P   CP
Sbjct: 272 YLYYVATGKASFVTVPMIVCP 292


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 264 LLEVEEKDPNRWRH 305
           LLE  + DP+RW++
Sbjct: 77  LLEFVQIDPHRWKY 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,202
Number of Sequences: 336
Number of extensions: 3317
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)