Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1929
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   4.0  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   5.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   7.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 354  VSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRP 226
            V+P +  +PG+   +   A  S P PP P +  P A   +P P
Sbjct: 1455 VAPVQPKAPGMVTNAP--APSSAPAPPAPVSQLPPAVPNVPVP 1495



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 357  GVSPSR-ISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRP 226
            G++P+  +S+P +   S      S P PP P  S P      P P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 100 SRRNGSMSRAVEAASKNRLHMDRNPQHSRITGRRKEIDNVMKRARQ 237
           SRR  S+S +  AAS + L M +   HS  +  R  I +++  A Q
Sbjct: 837 SRREASLSDSQSAASMDMLPMKKKLSHSSASSTR-SIKSLLTNANQ 881


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 588  HALSVRRRTRKHLLRNLHPNPKHRLQSEVRPERCNPQ 698
            H+L   +R R   +R+L  N K   Q E  PER  P+
Sbjct: 1198 HSLGFVQRIRGGRIRHLLNNSKFDKQMEALPERLRPR 1234


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 FARQLDRKLLEVEEKDPNRWRHTGYKQLYL 329
           ++   D K + V      RWRH+ + Q YL
Sbjct: 122 YSISFDAKYVLVSVNKSQRWRHSSFAQYYL 151


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 603 RRRTRKHLLRNLHPNPKHRLQSE 671
           R R R  L   LHPNP +RL ++
Sbjct: 593 RSRCRNTLYNILHPNPTYRLTAK 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,966
Number of Sequences: 5004
Number of extensions: 53146
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)