Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1929
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 33 0.20
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 32 0.45
03_05_0819 + 27948797-27948956,27948976-27949202 32 0.60
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 31 0.79
04_03_0922 + 20834195-20836603 31 0.79
04_04_1527 - 34167673-34168245 29 3.2
09_02_0181 - 5425833-5426527,5426667-5429397 29 4.2
08_02_0613 - 19330124-19331587 29 5.6
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 29 5.6
04_03_0238 - 13193508-13193946,13194010-13194062 29 5.6
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061... 28 7.4
06_03_0455 + 20978658-20978677,20979104-20979608 28 7.4
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 28 7.4
01_06_0166 + 27145250-27145778,27146062-27146516 28 7.4
06_01_0568 - 4015749-4015923,4016315-4016433 28 9.7
04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870 28 9.7
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 355 PGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQS-AERGVRCSAGATPPP 525
P P R L S+ L++ P LF RP A+ G+ S A RGVRCSA P P
Sbjct: 3 PPPPSPPRSLTSVSLRTPLSPL-LFLRPASCNPSAVSGSCSSGACRGVRCSAANKPSP 59
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -2
Query: 408 AGLEI*TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAA 247
AG+E+ AA N G + P + A V CS P PP A S AA
Sbjct: 195 AGMEVAMEAAAGGGGNGGGGGGGVVLPMMPACDDMVGICSSPAPPAAATSSAAA 248
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3
Query: 530 ARGGGVAPALHRTPRSADWTAPYRAPSRAMSGRANRAAG 414
A GGG +P+ RTPR A AP+ + S + SG A+ G
Sbjct: 18 AAGGGGSPS--RTPRLARTAAPFASSSSSSSGAASSGGG 54
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 82 FYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQHSRITGRRKEIDNVMKRA 231
FY+ + S+R ++ E ++ RL+ + Q +R+ RKE+D+ +K A
Sbjct: 378 FYSKIESQRVNQQQKSKEDSAAQRLNKIKLDQENRVHTLRKEVDHSIKMA 427
>04_03_0922 + 20834195-20836603
Length = 802
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -1
Query: 181 NVVGFCPCVSGFS-KQPR---LPETSIHCV-GTTSSCKTPKLFTGV*DEFSSM 38
N +GFC C+ GFS K P+ L + + C+ T C + K + + D+F SM
Sbjct: 310 NELGFCKCMKGFSIKSPKDWELDDRTDGCMRNTPLDCASNKTASSLTDKFHSM 362
>04_04_1527 - 34167673-34168245
Length = 190
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 360 AGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAA-GRRLPRP 226
A + ++ P +A S V + SGP P PAA+ A RR+PRP
Sbjct: 89 AAAAAPPVAGPACSA-SSTVESSSGPRGPRPAATAAAVPRRRVPRP 133
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 420 CGSGA-GLEI*TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGP-FPPLPA-ASCPA 250
C +GA G E T A + W AG + ++S T AT P P PA C
Sbjct: 1049 CPAGAAGGE--TGSATDAVWAAGGATRALASAAATRVGVAAATAPAPALPRAPARCRCRM 1106
Query: 249 AGRRLPRP 226
A RR RP
Sbjct: 1107 ACRRKARP 1114
>08_02_0613 - 19330124-19331587
Length = 487
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +1
Query: 238 SSPGSWTGSCWKWRKRTRTGGDIL----AISSYTWRGDPARAHPGVPGLLRRLGS 390
+SPG G C+ W R G IL A T +PARA + R LGS
Sbjct: 286 ASPGIHVGGCFYWLTHRRNRGRILRYDVAGGRVTVVREPARAEGSIGRAERSLGS 340
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +1
Query: 325 TWRGDP--ARAHPGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*---GAVQSAER 489
+WRG AR H G + G L AG ++L R AL A+ G+ +
Sbjct: 13 SWRGGETSARLHQGAAAMSNPAGGKHLVRLAGSSSL--RGGAALSPAVSISSGSRPATRA 70
Query: 490 GVRCSAGATPPPLASSQKV 546
G R A+PPP S V
Sbjct: 71 GARALRAASPPPACSIASV 89
>04_03_0238 - 13193508-13193946,13194010-13194062
Length = 163
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 277 RKRTRTGGDILAISSYTWRGDPARAHPG 360
RK R GGD ++SY + G PAR G
Sbjct: 114 RKNGRLGGDDFRLASYVFDGMPARKERG 141
>10_07_0147 +
13404711-13404764,13404865-13405232,13406105-13406153,
13406374-13406470,13406863-13407011,13407554-13407667,
13408196-13408327,13409143-13409256,13410233-13410454
Length = 432
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 343 ARAHPGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL 462
ARA +P LLR L S + G G AA + +++ +GAL
Sbjct: 42 ARADRALPALLRLLASAGGELGTGGAAADSLVNLSQDGAL 81
>06_03_0455 + 20978658-20978677,20979104-20979608
Length = 174
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +1
Query: 340 PARAHPGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQSAERGVRCSAGATP 519
P R + LR G G G A RP+ E A+ G A G R +AGA P
Sbjct: 2 PVRCNGQAGARLRTAGGGGGGWGLGAAGAEERPEAGAEAAVGGRGSEAGGGQR-AAGAEP 60
Query: 520 PPLASSQ 540
P A ++
Sbjct: 61 RPEAGAK 67
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 277 RKRTRTGGDILAISSYTWRGDPARAHPGVPGLLRRLGSLDLQSGA 411
R+R+ GG + S WR AR G G +R+ +SG+
Sbjct: 392 RRRSSGGGSVRKRSGAQWRSGSARRRSGGGGSVRKRSCAQWRSGS 436
>01_06_0166 + 27145250-27145778,27146062-27146516
Length = 327
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = +1
Query: 148 NRLHMDRNPQHSRIT-GRRKEIDNVMKR---ARQSSPGSWTGSCWKWRKRTRTGGDILAI 315
+R+H+D S++ GRR +R Q++ G+ W W GG+ +
Sbjct: 72 HRIHVDHCWIWSQVREGRRVAAGMQWRRQAAGMQAAAGAEEAWLWWWWHVEERGGEARGV 131
Query: 316 SSYTWRGDPARAHPGVPGLLRRLGSLDLQSGAGPAA 423
+ RGD A P R +G + AG AA
Sbjct: 132 EAGAARGDAAGGVAWRPARRRGVGCVTWSVEAGSAA 167
>06_01_0568 - 4015749-4015923,4016315-4016433
Length = 97
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 232 RQSSPGSWTGSCWKWRKRTRTGGDILAISSYTWRGDP 342
R +S GSW C+ + R + A S TWR P
Sbjct: 13 RDASFGSWWKKCFGAKARAEERARVRAGESVTWRTQP 49
>04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870
Length = 410
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 704 ALLWVAPLWPHLGLETVLWVWVQVSEEV 621
A +WV+P PHLG++ + V++ ++ E+
Sbjct: 225 ASVWVSPWIPHLGVDRLHGVYLDIAGEL 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,601,541
Number of Sequences: 37544
Number of extensions: 458085
Number of successful extensions: 2167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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