Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1929
(790 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072455-1|AAH72455.1| 263|Homo sapiens C11orf57 protein protein. 35 0.29
BC048133-1|AAH48133.1| 264|Homo sapiens C11orf57 protein protein. 35 0.29
BC030546-1|AAH30546.2| 264|Homo sapiens chromosome 11 open read... 35 0.29
BC005403-1|AAH05403.2| 264|Homo sapiens chromosome 11 open read... 35 0.29
AK125340-1|BAC86137.1| 292|Homo sapiens protein ( Homo sapiens ... 35 0.29
BX538107-1|CAD98020.1| 264|Homo sapiens hypothetical protein pr... 34 0.67
D80003-1|BAA11498.2| 2079|Homo sapiens KIAA0181 protein. 33 1.6
AL109824-4|CAB92721.2| 2063|Homo sapiens nuclear receptor coacti... 33 1.6
AF245115-1|AAF78480.1| 2063|Homo sapiens nuclear receptor coacti... 33 1.6
AF208227-1|AAF16403.1| 2001|Homo sapiens transcriptional coactiv... 33 1.6
AF177388-1|AAF13595.1| 2063|Homo sapiens cancer-amplified transc... 33 1.6
AF171667-1|AAF71829.1| 2063|Homo sapiens thyroid hormone recepto... 33 1.6
AF128458-1|AAF37003.1| 2063|Homo sapiens nuclear receptor coacti... 33 1.6
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 31 4.7
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 31 4.7
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 31 4.7
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 31 4.7
D14828-1|BAA03569.1| 523|Homo sapiens Tax helper protein 2 prot... 31 6.3
D14827-1|BAA03568.1| 506|Homo sapiens Tax helper protein 1 prot... 31 6.3
>BC072455-1|AAH72455.1| 263|Homo sapiens C11orf57 protein protein.
Length = 263
Score = 35.1 bits (77), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ ++K + E P+RW H+GYK+LY E
Sbjct: 61 AKSWNKKFYDYEANMPDRWGHSGYKELYPE 90
>BC048133-1|AAH48133.1| 264|Homo sapiens C11orf57 protein protein.
Length = 264
Score = 35.1 bits (77), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ ++K + E P+RW H+GYK+LY E
Sbjct: 61 AKSWNKKFYDYEANMPDRWGHSGYKELYPE 90
>BC030546-1|AAH30546.2| 264|Homo sapiens chromosome 11 open reading
frame 57 protein.
Length = 264
Score = 35.1 bits (77), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ ++K + E P+RW H+GYK+LY E
Sbjct: 61 AKSWNKKFYDYEANMPDRWGHSGYKELYPE 90
>BC005403-1|AAH05403.2| 264|Homo sapiens chromosome 11 open reading
frame 57 protein.
Length = 264
Score = 35.1 bits (77), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ ++K + E P+RW H+GYK+LY E
Sbjct: 61 AKSWNKKFYDYEANMPDRWGHSGYKELYPE 90
>AK125340-1|BAC86137.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ43350 fis, clone NT2RP7004123. ).
Length = 292
Score = 35.1 bits (77), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ ++K + E P+RW H+GYK+LY E
Sbjct: 90 AKSWNKKFYDYEANMPDRWGHSGYKELYPE 119
>BX538107-1|CAD98020.1| 264|Homo sapiens hypothetical protein
protein.
Length = 264
Score = 33.9 bits (74), Expect = 0.67
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ARQLDRKLLEVEEKDPNRWRHTGYKQLYLE 332
A+ +++ + E P+RW H+GYK+LY E
Sbjct: 61 AKSWNKRFYDYEANMPDRWGHSGYKELYPE 90
>D80003-1|BAA11498.2| 2079|Homo sapiens KIAA0181 protein.
Length = 2079
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1693 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1748
>AL109824-4|CAB92721.2| 2063|Homo sapiens nuclear receptor coactivator
6 protein.
Length = 2063
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1677 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1732
>AF245115-1|AAF78480.1| 2063|Homo sapiens nuclear receptor coactivator
protein.
Length = 2063
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1677 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1732
>AF208227-1|AAF16403.1| 2001|Homo sapiens transcriptional coactivator
AIB3 protein.
Length = 2001
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1615 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1670
>AF177388-1|AAF13595.1| 2063|Homo sapiens cancer-amplified
transcriptional coactivator ASC-2 protein.
Length = 2063
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1677 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1732
>AF171667-1|AAF71829.1| 2063|Homo sapiens thyroid hormone receptor
binding protein protein.
Length = 2063
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1677 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1732
>AF128458-1|AAF37003.1| 2063|Homo sapiens nuclear receptor coactivator
RAP250 protein.
Length = 2063
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 390 TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLPRPL 223
T AA T N+G+ P ++ G Q + S P PP +S PA + RPL
Sbjct: 1677 TIPAAPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPL 1732
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/57 (36%), Positives = 23/57 (40%)
Frame = +1
Query: 355 PGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQSAERGVRCSAGATPPP 525
PG PGL G LQ AGP P + E L G G +AG T PP
Sbjct: 407 PGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPP 463
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/57 (36%), Positives = 23/57 (40%)
Frame = +1
Query: 355 PGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQSAERGVRCSAGATPPP 525
PG PGL G LQ AGP P + E L G G +AG T PP
Sbjct: 407 PGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPP 463
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/57 (36%), Positives = 23/57 (40%)
Frame = +1
Query: 355 PGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQSAERGVRCSAGATPPP 525
PG PGL G LQ AGP P + E L G G +AG T PP
Sbjct: 453 PGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPP 509
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/57 (36%), Positives = 23/57 (40%)
Frame = +1
Query: 355 PGVPGLLRRLGSLDLQSGAGPAALFARPDIALEGAL*GAVQSAERGVRCSAGATPPP 525
PG PGL G LQ AGP P + E L G G +AG T PP
Sbjct: 455 PGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPP 511
>D14828-1|BAA03569.1| 523|Homo sapiens Tax helper protein 2
protein.
Length = 523
Score = 30.7 bits (66), Expect = 6.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 244 PGSWT--GSC-WKWRKRTR-TGGDILAISSYTWRGDPARAHPGVPGLLRRLGSLDL 399
PG W G W+W +R R + A+ + RGD A G P L + G L L
Sbjct: 433 PGKWLHPGKLQWQWGRRARGAAAEPAAVGAVRERGDHAEPAAGAPRQLHQHGQLGL 488
>D14827-1|BAA03568.1| 506|Homo sapiens Tax helper protein 1
protein.
Length = 506
Score = 30.7 bits (66), Expect = 6.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 244 PGSWT--GSC-WKWRKRTR-TGGDILAISSYTWRGDPARAHPGVPGLLRRLGSLDL 399
PG W G W+W +R R + A+ + RGD A G P L + G L L
Sbjct: 416 PGKWLHPGKLQWQWGRRARGAAAEPAAVGAVRERGDHAEPAAGAPRQLHQHGQLGL 471
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,418,733
Number of Sequences: 237096
Number of extensions: 2404518
Number of successful extensions: 8185
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8175
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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