Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1929
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 31 0.94
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 31 0.94
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 31 0.94
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 31 0.94
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 31 0.94
AF067608-3|AAC17655.2| 302|Caenorhabditis elegans Hypothetical ... 31 1.2
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 30 1.6
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 30 1.6
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 30 2.2
AL032658-2|CAA21744.1| 687|Caenorhabditis elegans Hypothetical ... 29 2.9
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 6.6
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 28 6.6
Z81510-2|CAB04162.1| 56|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 1 LAERRVADSSEISSTKIRLKLQ*KVLVFYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQH 180
L E+ V DSSE+SSTK +L+ + + +S +M ++ K+ + R+ +
Sbjct: 714 LEEQAVLDSSELSSTKRQLEHSRLEAIQWRKISEETTSAMQTQLKDHQKD-IDQCRHKKK 772
Query: 181 SRITGRRKEIDNVMKRARQS 240
I + +DN R ++S
Sbjct: 773 LEIQSMQLSLDNANARVKES 792
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 1 LAERRVADSSEISSTKIRLKLQ*KVLVFYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQH 180
L E+ V DSSE+SSTK +L+ + + +S +M ++ + + R+ +
Sbjct: 603 LEEQAVLDSSELSSTKRQLEHSRLEAIQWRKISDETTSAMQTQLK-DHQTDIDQCRHKKK 661
Query: 181 SRITGRRKEIDNVMKRARQS 240
S I + +DN R ++S
Sbjct: 662 SEIQSMQLSLDNANARVKES 681
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 1 LAERRVADSSEISSTKIRLKLQ*KVLVFYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQH 180
L E+ V DSSE+SSTK +L+ + + +S +M ++ K+ + R+ +
Sbjct: 714 LEEQAVLDSSELSSTKRQLEHSRLEAIQWRKISEETTSAMQTQLKDHQKD-IDQCRHKKK 772
Query: 181 SRITGRRKEIDNVMKRARQS 240
I + +DN R ++S
Sbjct: 773 LEIQSMQLSLDNANARVKES 792
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 1 LAERRVADSSEISSTKIRLKLQ*KVLVFYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQH 180
L E+ V DSSE+SSTK +L+ + + +S +M ++ K+ + R+ +
Sbjct: 712 LEEQAVLDSSELSSTKRQLEHSRLEAIQWRKISEETTSAMQTQLKDHQKD-IDQCRHKKK 770
Query: 181 SRITGRRKEIDNVMKRARQS 240
I + +DN R ++S
Sbjct: 771 LEIQSMQLSLDNANARVKES 790
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 1 LAERRVADSSEISSTKIRLKLQ*KVLVFYNWMSSRRNGSMSRAVEAASKNRLHMDRNPQH 180
L E+ V DSSE+SSTK +L+ + + +S +M ++ + + R+ +
Sbjct: 603 LEEQAVLDSSELSSTKRQLEHSRLEAIQWRKISDETTSAMQTQLK-DHQTDIDQCRHKKK 661
Query: 181 SRITGRRKEIDNVMKRARQS 240
S I + +DN R ++S
Sbjct: 662 SEIQSMQLSLDNANARVKES 681
>AF067608-3|AAC17655.2| 302|Caenorhabditis elegans Hypothetical
protein B0511.7 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 334 GDPARAHPGV----PGLLRRLGSLDLQSGAGPAALFARPDIALEGAL 462
GDP R+ P PG R L S L S GP AL A PD+ L G L
Sbjct: 216 GDPKRSEPPRKIVRPG--RELMSAPLSSTFGPMALNAAPDLELYGKL 260
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 118 MSRAVEAASK-NRLHMDRNPQHSRITGRRKEIDNVMKRARQSSPGSWTGSCWKWRKR 285
+SR E +K N++H+ P+ R T D ++K A S+P G C +W R
Sbjct: 617 ISRHFEYLAKFNKMHVTDVPEEQRDTNSLTICDMLVKCADISNPAREWGLCQRWAHR 673
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 118 MSRAVEAASK-NRLHMDRNPQHSRITGRRKEIDNVMKRARQSSPGSWTGSCWKWRKR 285
+SR E +K N++H+ P+ R T D ++K A S+P G C +W R
Sbjct: 617 ISRHFEYLAKFNKMHVTDVPEEQRDTNSLTICDMLVKCADISNPAREWGLCQRWAHR 673
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 106 RNGSMSRAVEAASKNR-LHMDRNPQHSRITGRRKEIDNVMKRARQSSPGSWTGSCWKWRK 282
R+GS + A + ++ R+ +HSR R ++R+R S W R
Sbjct: 321 RSGSRTPAQRHSRRSESTSRRRSGRHSRSRSRSPPRKRPVRRSRSRSRSRTPNRNWT-RA 379
Query: 283 RTRTGGDILAISSYTWRGDPARA 351
R+RT + S+ TW P+R+
Sbjct: 380 RSRTRSQAKSSSTLTWPLSPSRS 402
>AL032658-2|CAA21744.1| 687|Caenorhabditis elegans Hypothetical
protein Y76A2B.3 protein.
Length = 687
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 310 AISSYTWRGDPARAHPGVP 366
A++++TW GDP+ H G P
Sbjct: 452 ALATFTWMGDPSTGHCGAP 470
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 521 GGVAPALHRTPRSADWTAPYRAPSRAMSGRANRAAGPAP 405
GG APA P SA AP AP+ + A PAP
Sbjct: 98 GGAAPAAPAEPASAPAPAPEAAPAPEPTPAPAPEAAPAP 136
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 521 GGVAPALHRTPRSADWTAPYRAPSRAMSGRANRAAGPAP 405
GG APA P AP AP A++ A PAP
Sbjct: 173 GGAAPAAPAEPAPEPAPAPAPAPEAALAPETAPAPAPAP 211
>Z81510-2|CAB04162.1| 56|Caenorhabditis elegans Hypothetical
protein F21D9.3 protein.
Length = 56
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 181 SRITGRRKEIDNVMKRARQSSPGSWTGSCWKWRKR 285
++ +G++K + ++ +PG+W+ SC +R R
Sbjct: 20 AQCSGKKKGATSAKRKIFNDAPGTWSSSCCCFRSR 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,862
Number of Sequences: 27780
Number of extensions: 326450
Number of successful extensions: 1157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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