Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1929
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.61 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.61 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 24/64 (37%), Positives = 29/64 (45%)
 Frame = +1

Query: 253 WTGSCWKWRKRTRTGGDILAISSYTWRGDPARAHPGVPGLLRRLGSLDLQSGAGPAALFA 432
           ++ S   W   T TG   L I   T  G P    PGV  +LR  G+L L     PAA F 
Sbjct: 42  FSNSSGAWLDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRN-GTLVLL--PFPAAAF- 97

Query: 433 RPDI 444
           R D+
Sbjct: 98  RQDV 101



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 511  ATPPPLASSQKVIS 552
            A+PPP A+S K +S
Sbjct: 1752 ASPPPAATSMKSVS 1765


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 24/64 (37%), Positives = 29/64 (45%)
 Frame = +1

Query: 253 WTGSCWKWRKRTRTGGDILAISSYTWRGDPARAHPGVPGLLRRLGSLDLQSGAGPAALFA 432
           ++ S   W   T TG   L I   T  G P    PGV  +LR  G+L L     PAA F 
Sbjct: 42  FSNSSGAWLDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRN-GTLVLL--PFPAAAF- 97

Query: 433 RPDI 444
           R D+
Sbjct: 98  RQDV 101



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 511  ATPPPLASSQKVIS 552
            A+PPP A+S K +S
Sbjct: 1748 ASPPPAATSMKSVS 1761


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 582 MSHALSVRRRTRKHLLRNLHP 644
           +S A+S  R   KH L N+HP
Sbjct: 439 ISRAMSALRILEKHELANVHP 459


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = -2

Query: 399 EI*TSEAAEETWNAGVSPSRISSPGITAYSQYVATCSGPFPPLPAASCPAAGRRLP 232
           EI      +E  N G +     +    A +    T +G    LPAAS    G   P
Sbjct: 186 EIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATP 241


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 370 LLRRLGSLDLQSGAGPAALFARPDIALEG 456
           LLRR  S+D Q+ A     F   D A  G
Sbjct: 74  LLRRTDSMDSQNSASTYNSFLSSDSASSG 102


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 175 QHSRITGRRKEIDNVMKRARQ 237
           QHS+   +RKE++ + +R R+
Sbjct: 58  QHSKNEQQRKEMEQMRERERE 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,718
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)