Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1927
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.7  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   8.8  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 601 INKITTASFLAG-LPEPLFLFTYLIKIPLLFYYGLCTYIIYLHCILYN 741
           IN +    F+ G +P  + L  + +   +     L T II+LHC  YN
Sbjct: 129 INTLFYVGFVIGQIPGHMLLQRFPVSKFVAASTALWTIIIFLHCAAYN 176


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 288 YLLVKCIHGYCSILNSRKVISSSNL-EGFHFTDPFK 184
           YLL+  I G+C I +S    +S  L EG   T  FK
Sbjct: 282 YLLIYLISGFCYISDSTSGRASRFLQEGLRITGDFK 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,862
Number of Sequences: 5004
Number of extensions: 57784
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)