Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1927
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           30   2.3  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     29   5.3  
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    28   9.2  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 539 LCMVKHHVYTVTSHYFYVHS*AKSYPTKHQAFY 441
           +C++   +YT+ S+Y  VHS    YPT   +++
Sbjct: 427 VCLLLQAIYTMKSYYCEVHSRFNPYPTTLSSYF 459


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 551 LCVPLCMVKHHVYTVTSHYFYVHS 480
           L +P+C+    +Y + +HYF  H+
Sbjct: 190 LRIPICLEATQIYAINNHYFVYHA 213


>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 622 SFLAGLPEPL-FLFTYLIKIPLLFY 693
           ++L  LPEP  F+FT+   +PL+F+
Sbjct: 198 TYLLELPEPFSFIFTWFAALPLIFW 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,979
Number of Sequences: 37544
Number of extensions: 294806
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)