Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1927
         (757 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119474-1|AAM50128.1|  694|Drosophila melanogaster GH05505p pro...    33   0.42 
AE014297-929|AAF54372.1|  694|Drosophila melanogaster CG8135-PA ...    33   0.42 
AY071635-1|AAL49257.1|  242|Drosophila melanogaster RE67916p pro...    29   9.1  
AE014297-1051|AAF54460.1|  265|Drosophila melanogaster CG8534-PA...    29   9.1  
AE014297-402|AAF51919.2|  242|Drosophila melanogaster CG15582-PA...    29   9.1  
AE014296-65|AAF47365.1|  150|Drosophila melanogaster CG13879-PA ...    29   9.1  

>AY119474-1|AAM50128.1|  694|Drosophila melanogaster GH05505p
           protein.
          Length = 694

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 366 YCTNRNVSRNRFL*ATFIYKHYSTNVKRLVFGRVALC 476
           YCT   + R RFL   ++  H+ TN   L+F  + LC
Sbjct: 440 YCTYSTILRIRFLNLYYLAPHHQTNEHSLIFSGMLLC 476


>AE014297-929|AAF54372.1|  694|Drosophila melanogaster CG8135-PA
           protein.
          Length = 694

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 366 YCTNRNVSRNRFL*ATFIYKHYSTNVKRLVFGRVALC 476
           YCT   + R RFL   ++  H+ TN   L+F  + LC
Sbjct: 440 YCTYSTILRIRFLNLYYLAPHHQTNEHSLIFSGMLLC 476


>AY071635-1|AAL49257.1|  242|Drosophila melanogaster RE67916p
           protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 405 TKIYF*KRFDLYNNVRGFAVDGNYELF 325
           T+ Y  + FD YNN+ GF  DG   +F
Sbjct: 66  TRCYLSEMFDFYNNLTGFNKDGIVGVF 92


>AE014297-1051|AAF54460.1|  265|Drosophila melanogaster CG8534-PA
           protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 542 PLCMVKHHVYTVTSHYFYVHS*AKSYPTKHQAFYISRIMLI 420
           PLC++   V+ +   Y+Y+ S +K   T     YI+ + L+
Sbjct: 164 PLCLLNVAVHVIMYAYYYLSSVSKDVQTSRWKKYITIVQLV 204


>AE014297-402|AAF51919.2|  242|Drosophila melanogaster CG15582-PA
           protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 405 TKIYF*KRFDLYNNVRGFAVDGNYELF 325
           T+ Y  + FD YNN+ GF  DG   +F
Sbjct: 66  TRCYLSEMFDFYNNLTGFNKDGIVGVF 92


>AE014296-65|AAF47365.1|  150|Drosophila melanogaster CG13879-PA
           protein.
          Length = 150

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 210 GFHFTDPFK*LNVILIDLDEVNGSVFNKL*CSQFR--LHIQTDNLKYFVDF 64
           G HF D  K  +V L D  + + ++ +K  C+Q+   LHI   NL Y  DF
Sbjct: 4   GQHFDDQLKLASVELGDFSDDDLALLDK--CAQYYSLLHIHDINLNYLRDF 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,647,266
Number of Sequences: 53049
Number of extensions: 556835
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)