Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1926
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...   109   3e-25
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    28   1.3  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    28   1.7  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   3.9  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   5.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   6.9  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   6.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   9.1  

>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/90 (56%), Positives = 62/90 (68%)
 Frame = +2

Query: 239 KLEKAHIEAEYRNFPARETEIGKVINNYLSSKNELSDEAIHLLFSANRWERAQNIIKTLE 418
           KL   H +AE   FP R T IGK I++YL    +L+D+ IHLLFSANRWE  Q I + + 
Sbjct: 30  KLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLNDQVIHLLFSANRWETIQYIYEQIN 89

Query: 419 GGTTIVLDRYCYSGVAFSAAKGLDLNWCKS 508
            G T +LDRY +SG+AFSAAKGLD  WCKS
Sbjct: 90  KGVTCILDRYAFSGIAFSAAKGLDWEWCKS 119



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 511 DAGLPQPDKVFFLTMPLEAVLKRNGFGNERYEVVDFQKKVWNIYSKL 651
           D GLP+PD V FL +       R  +G ERYE ++ Q+KV   + +L
Sbjct: 121 DRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRL 167



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 168 RGALIVIEGIDRTGKSTQGKILVESL 245
           RG LIVIEG+DR+GKSTQ ++LV+ L
Sbjct: 6   RGRLIVIEGLDRSGKSTQCQLLVDKL 31


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 218 CRLPCSIDTF--NNY*STSFHINSFTLLLWMSLD 123
           C LPC +D+F  +N+   ++ + +F+L LW   D
Sbjct: 99  CALPCFVDSFFPSNFFLRTYALFTFSLQLWSGND 132


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  LRLRK*TYQIIKRHPQ*KCKTINMKRGALIVIEGIDRTGKSTQGKILVESL 245
           L++    ++ +  HP  K   I+++  + I + G +  GKST  K+L+E L
Sbjct: 518 LQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQL 568


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 IDRTGKSTQGKILVESLKKHTLKLNTEIFLPV-RQKLEKS 311
           I R G+   G + ++ LKK+T  +  + FLPV R  LEKS
Sbjct: 372 IRRLGRKEIGSV-IDELKKNTDNIIRKSFLPVLRTLLEKS 410


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 714 NICLNCVHCSVSIQDVPIRFYQFRINIPHFLLEIYHFISFVP 589
           +I L+C H  +  +  P   +    +IP FL  ++ F++  P
Sbjct: 6   SIFLSCSHRVIQAKHPPFPLFHSYFHIPDFLSFVFPFVASPP 47


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 135 PQ*KCKTINMKRGALIVIEGIDRTGKSTQGKILVESLKKHTLKLNTE 275
           P  KCK +   + +L     +    +      +VE+L+ H+LK +T+
Sbjct: 620 PPSKCKWVYKSKYSLAANHKVPAASEVAYVSAIVENLESHSLKFSTK 666


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 541 FFLTMPLEAVLKRNGFGNERYEV 609
           FFL +  ++++ R G G+ RYE+
Sbjct: 445 FFLHLNQQSIIPRRGRGSSRYEI 467


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 159 NMKRGALIVIEGIDRTGKSTQGKILVESLKKHTLKLN 269
           ++ + A I++ G+   GK+T GKI+ + L    L L+
Sbjct: 859 SISKNASIILIGMRGAGKTTIGKIIAKQLNFKFLDLD 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,497
Number of Sequences: 5004
Number of extensions: 68031
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)