Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1926
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1444 - 26578007-26578117,26578370-26578474,26578971-265790... 109 2e-24
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246 36 0.047
06_01_0052 + 453923-454179,454265-454494,454952-455062,455200-45... 29 5.4
04_04_0292 + 24181486-24181515,24181729-24182616,24182702-241828... 29 5.4
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 28 7.2
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 28 9.5
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 28 9.5
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 9.5
>07_03_1444 -
26578007-26578117,26578370-26578474,26578971-26579030,
26579122-26579233,26579390-26579716,26579814-26579860
Length = 253
Score = 109 bits (263), Expect = 2e-24
Identities = 48/83 (57%), Positives = 65/83 (78%)
Frame = +2
Query: 260 EAEYRNFPARETEIGKVINNYLSSKNELSDEAIHLLFSANRWERAQNIIKTLEGGTTIVL 439
+AE FP R T +G++I+ YL++++EL D IHLLFSANRWE+ + + L GGTT+++
Sbjct: 81 QAEGWRFPDRGTSVGQMISAYLANESELDDRTIHLLFSANRWEKRALMERKLLGGTTLIV 140
Query: 440 DRYCYSGVAFSAAKGLDLNWCKS 508
DRY YSGVAFSAAKGLD+ WCK+
Sbjct: 141 DRYSYSGVAFSAAKGLDIEWCKA 163
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = +1
Query: 472 SSKRFRSELVQVSDAGLPQPDKVFFLTMPLEAVLKRNGFGNERYEVVDFQKKVWNIYSKL 651
++K E + + GL PD V +L + E +R G+G ERYE ++FQKKV Y L
Sbjct: 152 AAKGLDIEWCKAPENGLIAPDLVVYLDVQPEKAAERGGYGGERYEKIEFQKKVGEHYHSL 211
Query: 652 IEPNWDVLDANRTMDAIQTDI 714
+ W V+D + M+ ++ +
Sbjct: 212 RDSTWKVVDGSLPMEVVEEQL 232
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +3
Query: 168 RGALIVIEGIDRTGKSTQGKILVESLK 248
RGALIV+EG+DR+GKS+Q L+ L+
Sbjct: 50 RGALIVLEGLDRSGKSSQCARLLSFLQ 76
>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
Length = 749
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 ETEIGKVINNYLSSKNELSDEAIHLLFSANRW-ERAQNIIKTLEGGTTI 433
ET I ++ +L + +DE + LL SA RW E A +I+ L GG+ +
Sbjct: 165 ETSI-RIYRRFLQFEPSRADELVELLVSAGRWQEAADHIVSVLNGGSDV 212
>06_01_0052 +
453923-454179,454265-454494,454952-455062,455200-455352,
455440-455974,456334-456733
Length = 561
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 658 PNWDVLDANRTMDAIQTDILSNHWRS 735
P+W V+ +D ++T +L HWRS
Sbjct: 527 PSWRVVMGEGFLDVLRTALLLRHWRS 552
>04_04_0292 +
24181486-24181515,24181729-24182616,24182702-24182854,
24183131-24183185,24184860-24185047,24185271-24185351
Length = 464
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 670 VLDANRTMDAIQTDILSNHWR 732
+LD +T DA++T +LS WR
Sbjct: 31 ILDRLKTRDAVRTSVLSRRWR 51
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 652 IEPNWDVLDANRTMDAIQTDILSNHWRS 735
+E D+L DA++T+ILS+ WRS
Sbjct: 536 LEIKADILSRLNVQDAVRTNILSSVWRS 563
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 481 RFRSELVQVSDAGLPQP-DKVFFLTMPLEAVLKRNGFGNERYEVVDFQKKVWNIYSKLIE 657
++ S +V + G+P P D + T L+ +LK N + VVD ++ +Y K +
Sbjct: 179 KYYSPVVPIEIQGIPFPLDLILLDTKDLDVILKMNWL-TQFQGVVDCARRTVTVYQKPDQ 237
Query: 658 P 660
P
Sbjct: 238 P 238
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 242 LEKAHIEAEYRNFPARETEIGKVI-NNYLSSKNELSDEAIHLLFSANRWERAQNIIKTLE 418
+++AH ++ NF A VI +NY S+ + + E I + F NR +A++ + E
Sbjct: 468 IKEAH---DFFNFYALLAGFSVVIAHNYHSTSKKRNGEVIRVTFKCNRHGKAKSESQEEE 524
Query: 419 GGTTIVLDR 445
T+V +R
Sbjct: 525 TEETVVAER 533
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 242 LEKAHIEAEYRNFPARETEIGKVI-NNYLSSKNELSDEAIHLLFSANRWERAQNIIKTLE 418
+++AH ++ NF A VI +NY S+ + + E I + F NR +A++ + E
Sbjct: 496 IKEAH---DFFNFYALLAGFSVVIAHNYHSTSKKRNGEVIRVTFKCNRHGKAKSESQEEE 552
Query: 419 GGTTIVLDR 445
T+V +R
Sbjct: 553 TEETVVAER 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,949
Number of Sequences: 37544
Number of extensions: 372320
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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