Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1925
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 73 6e-14
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 33 0.062
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 31 0.14
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.8
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 4.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 4.1
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 5.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 7.1
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.4
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 25 9.4
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +2
Query: 386 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSRLVTDARLKNARPSTGK 559
LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT + + TG+
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGE 69
Score = 71.3 bits (167), Expect = 1e-13
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N + K++K C C +I +AS++C EKRKTI GEDVL ALNTLGF+NY
Sbjct: 28 NAKISKEAKDCVQDCVSEFISF---VTGEASEQCTQEKRKTITGEDVLLALNTLGFENYA 84
Query: 604 KPLRLYLTKYRE 639
+ L++ LTKYRE
Sbjct: 85 EVLKISLTKYRE 96
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 32.7 bits (71), Expect = 0.062
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 356 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 508
N + + LP A + K++ +P + K+AR+ + EC EFI V+S
Sbjct: 2 NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSS 52
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 350 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 508
KS D LP + I +++K +PE + K+A + + + F+SF+TS
Sbjct: 5 KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTS 57
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -1
Query: 590 NPRVFNANNTSSPLMVLRFSTLHLSLACSLQT 495
NPR N SS LM L+F HL LAC T
Sbjct: 1261 NPRFLNQPKPSS-LMCLKFHPHHLLLACGDNT 1291
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 734 LVQFVDGDLLNWPGVFSRLY*SCS-QLHGDITISLYFVKY 618
L+ F G L NW +FS+ +CS D T SL F Y
Sbjct: 269 LMSFFAGILFNWNDLFSKNISACSVPAFIDQTFSLLFFTY 308
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 266 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 379
NG V D T VV S ED+ N ++ N P+ +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 691 YLAGCTDHARSCMVT*QFLYILSSTNAKVSRSYQIP 584
Y A TDH C LY+ +ST+AK RSY IP
Sbjct: 90 YDAVYTDHL--CEADQLGLYLWNSTSAKSIRSYIIP 123
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 356 NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 478
+ P E D I ++A + +IP+N KI+ AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 116 LNTQFCKHYVTLSCKSSTHFFNKRELLLK 202
L + K +T CK +T +FN R +K
Sbjct: 106 LKSHRIKDKITTKCKGTTKYFNSRHFEIK 134
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 388
V S +L+ E+NS++ + + P +QDR L
Sbjct: 31 VISSKILQFEDNSETSLRHDLPKYDQDRLL 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,731
Number of Sequences: 5004
Number of extensions: 66255
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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