Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1925
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)         29   3.3  
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            28   7.5  

>SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)
          Length = 149

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
           K+++   G  + +++     C   A++     KRKT+   DV+ AL  + F+ ++  L+ 
Sbjct: 31  KEARSAIGKAASVFVLYATSC---ANNFALSHKRKTLQATDVISALEDMEFEQFIPQLKQ 87

Query: 619 YLTKYRE 639
            L  +++
Sbjct: 88  DLNAFQK 94


>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 359 APLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 508
           APL  + + LP+ N AKI+   I  + K      EC+++     + F+ S
Sbjct: 426 APLTIEGKELPVVNSAKILGLTISNDLKWNDHVLECIKKANKRRLYFIVS 475


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 302  NSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 412
            NSDD+L DEN S S   S+A   E   ++ + N+ K+
Sbjct: 1169 NSDDLLGDENMSSSSLPSDAEFNEFHPWI-VDNVRKL 1204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,055,184
Number of Sequences: 59808
Number of extensions: 476799
Number of successful extensions: 1334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)