Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1925
(791 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59710-1|CAA42230.1| 205|Homo sapiens CAAT-box DNA binding prot... 93 1e-18
L06145-1|AAA59930.1| 207|Homo sapiens CCAAT-box DNA binding pro... 93 1e-18
BC005317-1|AAH05317.1| 207|Homo sapiens nuclear transcription f... 93 1e-18
BC005316-1|AAH05316.1| 207|Homo sapiens nuclear transcription f... 93 1e-18
BC007035-1|AAH07035.1| 207|Homo sapiens nuclear transcription f... 92 2e-18
M97388-1|AAA58442.1| 176|Homo sapiens TATA binding protein-asso... 39 0.018
BT006972-1|AAP35618.1| 176|Homo sapiens down-regulator of trans... 39 0.018
BC068553-1|AAH68553.1| 176|Homo sapiens DR1 protein protein. 39 0.018
BC035507-1|AAH35507.1| 176|Homo sapiens down-regulator of trans... 39 0.018
BC002809-1|AAH02809.1| 176|Homo sapiens down-regulator of trans... 39 0.018
AL137159-1|CAC17578.1| 176|Homo sapiens down-regulator of trans... 39 0.018
AK223442-1|BAD97162.1| 176|Homo sapiens down-regulator of trans... 39 0.018
DQ072116-1|AAY57326.1| 147|Homo sapiens polymerase (DNA directe... 36 0.17
BC004170-1|AAH04170.1| 147|Homo sapiens polymerase (DNA directe... 36 0.17
BC003166-1|AAH03166.1| 147|Homo sapiens polymerase (DNA directe... 36 0.17
AY720898-1|AAU15052.1| 147|Homo sapiens arsenic transactivated ... 36 0.17
AL137066-5|CAH70100.1| 147|Homo sapiens polymerase (DNA directe... 36 0.17
AK074782-1|BAC11206.1| 147|Homo sapiens protein ( Homo sapiens ... 36 0.17
AK074629-1|BAC11099.1| 147|Homo sapiens protein ( Homo sapiens ... 36 0.17
AF261689-1|AAF90133.1| 147|Homo sapiens DNA polymerase epsilon ... 36 0.17
AF226077-1|AAF72417.1| 147|Homo sapiens CHRAC17 protein. 36 0.17
AK074762-1|BAC11190.1| 147|Homo sapiens protein ( Homo sapiens ... 35 0.29
BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein. 33 0.89
BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein. 33 0.89
AB033059-1|BAA86547.1| 1023|Homo sapiens KIAA1233 protein protein. 33 0.89
Z22969-1|CAA80542.1| 1151|Homo sapiens M130 antigen cytoplasmic ... 30 8.3
L25941-1|AAA59495.1| 615|Homo sapiens integral nuclear envelope... 30 8.3
L25931-1|AAA59494.1| 615|Homo sapiens lamin B receptor protein. 30 8.3
BC051281-1|AAH51281.1| 1156|Homo sapiens CD163 molecule protein. 30 8.3
BC020079-1|AAH20079.1| 615|Homo sapiens lamin B receptor protein. 30 8.3
AK222834-1|BAD96554.1| 615|Homo sapiens lamin B receptor varian... 30 8.3
AB209514-1|BAD92751.1| 616|Homo sapiens lamin B receptor varian... 30 8.3
>X59710-1|CAA42230.1| 205|Homo sapiens CAAT-box DNA binding protein
subunit B (NF-YB) protein.
Length = 205
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 FVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECV 469
+V+ D ED N+ + + S REQD +LPIAN+A+IMK AIP+ GKIAKDA+ECV
Sbjct: 25 YVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECV 84
Query: 470 QECISEFISFVTS 508
QEC+SEFISF+TS
Sbjct: 85 QECVSEFISFITS 97
Score = 82.6 bits (195), Expect = 1e-15
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +1
Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
KD+K C C +I +AS+RC EKRKTINGED+LFA++TLGFD+YV+PL+L
Sbjct: 78 KDAKECVQECVSEFISF---ITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL 134
Query: 619 YLTKYRE 639
YL K+RE
Sbjct: 135 YLQKFRE 141
>L06145-1|AAA59930.1| 207|Homo sapiens CCAAT-box DNA binding
protein subunit NF-YB. protein.
Length = 207
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 FVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECV 469
+V+ D ED N+ + + S REQD +LPIAN+A+IMK AIP+ GKIAKDA+ECV
Sbjct: 27 YVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECV 86
Query: 470 QECISEFISFVTS 508
QEC+SEFISF+TS
Sbjct: 87 QECVSEFISFITS 99
Score = 82.6 bits (195), Expect = 1e-15
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +1
Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
KD+K C C +I +AS+RC EKRKTINGED+LFA++TLGFD+YV+PL+L
Sbjct: 80 KDAKECVQECVSEFISF---ITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL 136
Query: 619 YLTKYRE 639
YL K+RE
Sbjct: 137 YLQKFRE 143
>BC005317-1|AAH05317.1| 207|Homo sapiens nuclear transcription
factor Y, beta protein.
Length = 207
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 FVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECV 469
+V+ D ED N+ + + S REQD +LPIAN+A+IMK AIP+ GKIAKDA+ECV
Sbjct: 27 YVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECV 86
Query: 470 QECISEFISFVTS 508
QEC+SEFISF+TS
Sbjct: 87 QECVSEFISFITS 99
Score = 82.6 bits (195), Expect = 1e-15
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +1
Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
KD+K C C +I +AS+RC EKRKTINGED+LFA++TLGFD+YV+PL+L
Sbjct: 80 KDAKECVQECVSEFISF---ITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL 136
Query: 619 YLTKYRE 639
YL K+RE
Sbjct: 137 YLQKFRE 143
>BC005316-1|AAH05316.1| 207|Homo sapiens nuclear transcription
factor Y, beta protein.
Length = 207
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 FVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECV 469
+V+ D ED N+ + + S REQD +LPIAN+A+IMK AIP+ GKIAKDA+ECV
Sbjct: 27 YVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECV 86
Query: 470 QECISEFISFVTS 508
QEC+SEFISF+TS
Sbjct: 87 QECVSEFISFITS 99
Score = 82.6 bits (195), Expect = 1e-15
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +1
Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
KD+K C C +I +AS+RC EKRKTINGED+LFA++TLGFD+YV+PL+L
Sbjct: 80 KDAKECVQECVSEFISF---ITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL 136
Query: 619 YLTKYRE 639
YL K+RE
Sbjct: 137 YLQKFRE 143
>BC007035-1|AAH07035.1| 207|Homo sapiens nuclear transcription
factor Y, beta protein.
Length = 207
Score = 92.3 bits (219), Expect = 2e-18
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = +2
Query: 308 DDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISE 487
DD + N+ + + S REQD +LPIAN+A+IMK AIP+ GKIAKDA+ECVQEC+SE
Sbjct: 33 DDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSE 92
Query: 488 FISFVTS 508
FISF+TS
Sbjct: 93 FISFITS 99
Score = 82.6 bits (195), Expect = 1e-15
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +1
Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
KD+K C C +I +AS+RC EKRKTINGED+LFA++TLGFD+YV+PL+L
Sbjct: 80 KDAKECVQECVSEFISF---ITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL 136
Query: 619 YLTKYRE 639
YL K+RE
Sbjct: 137 YLQKFRE 143
>M97388-1|AAA58442.1| 176|Homo sapiens TATA binding
protein-associated phosphoprotein protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>BT006972-1|AAP35618.1| 176|Homo sapiens down-regulator of
transcription 1, TBP-binding (negative cofactor 2)
protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>BC068553-1|AAH68553.1| 176|Homo sapiens DR1 protein protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>BC035507-1|AAH35507.1| 176|Homo sapiens down-regulator of
transcription 1, TBP-binding (negative cofactor 2)
protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>BC002809-1|AAH02809.1| 176|Homo sapiens down-regulator of
transcription 1, TBP-binding (negative cofactor 2)
protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>AL137159-1|CAC17578.1| 176|Homo sapiens down-regulator of
transcription 1, TBP-binding (negative cofactor 2)
protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>AK223442-1|BAD97162.1| 176|Homo sapiens down-regulator of
transcription 1 variant protein.
Length = 176
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 424 NTREWKDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYV 603
N R D++ C +I H++ +E A++ C ++KTI+ E V+ AL +LGF +Y+
Sbjct: 28 NVRVANDARELVVNCCTEFI--HLISSE-ANEICNKSEKKTISPEHVIQALESLGFGSYI 84
Query: 604 KPLRLYLTKYREIVM 648
++ L + + + +
Sbjct: 85 SEVKEVLQECKTVAL 99
>DQ072116-1|AAY57326.1| 147|Homo sapiens polymerase (DNA directed),
epsilon 3 (p17 subunit) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>BC004170-1|AAH04170.1| 147|Homo sapiens polymerase (DNA directed),
epsilon 3 (p17 subunit) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>BC003166-1|AAH03166.1| 147|Homo sapiens polymerase (DNA directed),
epsilon 3 (p17 subunit) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AY720898-1|AAU15052.1| 147|Homo sapiens arsenic transactivated
protein protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AL137066-5|CAH70100.1| 147|Homo sapiens polymerase (DNA directed),
epsilon 3 (p17 subunit) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AK074782-1|BAC11206.1| 147|Homo sapiens protein ( Homo sapiens
cDNA FLJ90301 fis, clone NT2RP2000610, weakly similar to
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A. ).
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AK074629-1|BAC11099.1| 147|Homo sapiens protein ( Homo sapiens
cDNA FLJ90148 fis, clone HEMBB1001959, weakly similar to
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A. ).
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AF261689-1|AAF90133.1| 147|Homo sapiens DNA polymerase epsilon p17
subunit protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AF226077-1|AAF72417.1| 147|Homo sapiens CHRAC17 protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>AK074762-1|BAC11190.1| 147|Homo sapiens protein ( Homo sapiens
cDNA FLJ90281 fis, clone NT2RP1000468, weakly similar to
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A . ).
Length = 147
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 535 KRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 636
KRKT+N DVL A+ + F +V PL+ L YR
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVIPLKEALEAYR 93
>BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein.
Length = 1682
Score = 33.5 bits (73), Expect = 0.89
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 433 EWKDSKRCKGMCSGMYIRI---HIVCNEQASD-RCKVEKRKTI 549
+W+ RC G C G +R+ H C +SD C KR T+
Sbjct: 1546 QWEPGNRCPGRCMGRAVRMQQRHTACQHNSSDSNCDDRKRPTL 1588
>BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein.
Length = 1691
Score = 33.5 bits (73), Expect = 0.89
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 433 EWKDSKRCKGMCSGMYIRI---HIVCNEQASD-RCKVEKRKTI 549
+W+ RC G C G +R+ H C +SD C KR T+
Sbjct: 1546 QWEPGNRCPGRCMGRAVRMQQRHTACQHNSSDSNCDDRKRPTL 1588
>AB033059-1|BAA86547.1| 1023|Homo sapiens KIAA1233 protein protein.
Length = 1023
Score = 33.5 bits (73), Expect = 0.89
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 433 EWKDSKRCKGMCSGMYIRI---HIVCNEQASD-RCKVEKRKTI 549
+W+ RC G C G +R+ H C +SD C KR T+
Sbjct: 878 QWEPGNRCPGRCMGRAVRMQQRHTACQHNSSDSNCDDRKRPTL 920
>Z22969-1|CAA80542.1| 1151|Homo sapiens M130 antigen cytoplasmic
variant 1 protein.
Length = 1151
Score = 30.3 bits (65), Expect = 8.3
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 266 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAK--IMKRAIPENG 439
N L ADD ++NS EN+ +S S A L +FLPI+ + K I+ ENG
Sbjct: 1095 NSCLNADDLDLMNSS-----ENSHESADFSAAELISVSKFLPISGMEKEAILSHTEKENG 1149
Query: 440 KI 445
+
Sbjct: 1150 NL 1151
>L25941-1|AAA59495.1| 615|Homo sapiens integral nuclear envelope
inner membrane protein protein.
Length = 615
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 728 QFVDGDLLN--WPGVFSRLY*SCSQLHGDITISLYFVKYK 615
+F DG+++ WPG S LY L D T LY VKYK
Sbjct: 5 KFADGEVVRGRWPG--SSLYYEVEILSHDSTSQLYTVKYK 42
>L25931-1|AAA59494.1| 615|Homo sapiens lamin B receptor protein.
Length = 615
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 728 QFVDGDLLN--WPGVFSRLY*SCSQLHGDITISLYFVKYK 615
+F DG+++ WPG S LY L D T LY VKYK
Sbjct: 5 KFADGEVVRGRWPG--SSLYYEVEILSHDSTSQLYTVKYK 42
>BC051281-1|AAH51281.1| 1156|Homo sapiens CD163 molecule protein.
Length = 1156
Score = 30.3 bits (65), Expect = 8.3
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 266 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAK--IMKRAIPENG 439
N L ADD ++NS EN+ +S S A L +FLPI+ + K I+ ENG
Sbjct: 1100 NSCLNADDLDLMNSS-----ENSHESADFSAAELISVSKFLPISGMEKEAILSHTEKENG 1154
Query: 440 KI 445
+
Sbjct: 1155 NL 1156
>BC020079-1|AAH20079.1| 615|Homo sapiens lamin B receptor protein.
Length = 615
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 728 QFVDGDLLN--WPGVFSRLY*SCSQLHGDITISLYFVKYK 615
+F DG+++ WPG S LY L D T LY VKYK
Sbjct: 5 KFADGEVVRGRWPG--SSLYYEVEILSHDSTSQLYTVKYK 42
>AK222834-1|BAD96554.1| 615|Homo sapiens lamin B receptor variant
protein.
Length = 615
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 728 QFVDGDLLN--WPGVFSRLY*SCSQLHGDITISLYFVKYK 615
+F DG+++ WPG S LY L D T LY VKYK
Sbjct: 5 KFADGEVVRGRWPG--SSLYYEVEILSHDSTSQLYTVKYK 42
>AB209514-1|BAD92751.1| 616|Homo sapiens lamin B receptor variant
protein.
Length = 616
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 728 QFVDGDLLN--WPGVFSRLY*SCSQLHGDITISLYFVKYK 615
+F DG+++ WPG S LY L D T LY VKYK
Sbjct: 6 KFADGEVVRGRWPG--SSLYYEVEILSHDSTSQLYTVKYK 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,596,838
Number of Sequences: 237096
Number of extensions: 2133540
Number of successful extensions: 7188
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 7040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7181
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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