Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1925
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    70   2e-12
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.7  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +2

Query: 365 LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 508
           L +Q+RFLPIAN+ +IMK  +    K+AKDA+EC QEC+SEFISF+ S
Sbjct: 59  LLDQERFLPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIAS 106



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +1

Query: 439 KDSKRCKGMCSGMYIRIHIVCNEQASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRL 618
           KD+K C   C   +I    + +E A++ C + KRKTI  +D+L A+   GFDNY +P+R+
Sbjct: 87  KDAKECAQECVSEFISF--IASE-AAEICNITKRKTITADDLLTAMEATGFDNYAEPMRI 143

Query: 619 YLTKYREI--VMSPCNCEHDQYNLLNTPGQFKRSPSTN*TRP*FYIAKTAGLC 771
           +L KYR+   +  P +  H  Y     P QF+  P     RP F+  +    C
Sbjct: 144 FLQKYRQAHKITGPIHRTHPDY---VRPPQFQMDPF---VRPLFFDTEQGRRC 190


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 260 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 394
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 132 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 176


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 260 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 394
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 173 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,476
Number of Sequences: 27780
Number of extensions: 371668
Number of successful extensions: 911
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)