Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1925
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 643 QFLYILSSTNAKVSRSYQIPGYSMRTI 563
           +  + LSS +   ++SY+IP Y   T+
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLYGKMTL 645


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 643 QFLYILSSTNAKVSRSYQIPGYSMRTI 563
           +  + LSS +   ++SY+IP Y   T+
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLYGKMTL 645


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 472 LNTFPCIFCYLSILWYCPFH 413
           LN    +FC L + W  PF+
Sbjct: 280 LNFILHLFCLLDVQWRIPFN 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,515
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)