Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1924
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.8  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   4.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   4.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.4  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   6.4  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   6.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   6.4  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   8.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGV 389
           Q  H+Y+ +A+ GD +++ +  V  NL+ V
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSV 187


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGV 389
           Q  H+Y+ +A+ GD +++ +  V  NL+ V
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSV 187


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGV 389
           Q  H+Y+ +A+ GD +++ +  V  NL+ V
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSV 187


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 53 HYQLRRRYASIARHLCM 3
          HY  RRR   IA  LC+
Sbjct: 29 HYLTRRRRIEIAHALCL 45


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 53  HYQLRRRYASIARHLCM 3
           HY  RRR   IA  LC+
Sbjct: 180 HYLTRRRRIEIAHALCL 196


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 53  HYQLRRRYASIARHLCM 3
           HY  RRR   IA  LC+
Sbjct: 239 HYLTRRRRIEIAHALCL 255


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 570 PSPARNGMFGPDPMH 526
           P  A+NG +GPD ++
Sbjct: 290 PQLAKNGAYGPDMIY 304


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 646 WVCMILSVI 620
           WVCM+L+V+
Sbjct: 15  WVCMVLAVV 23


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 646 WVCMILSVI 620
           WVCM+L+V+
Sbjct: 15  WVCMVLAVV 23


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 646 WVCMILSVI 620
           WVCM+L+V+
Sbjct: 15  WVCMVLAVV 23


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 289 RPSVKYSTSTDQMQLMVMRRSNTTVK 366
           RP  KY+T  D + L  + +S+  +K
Sbjct: 19  RPQEKYTTKYDNIDLEEILKSDRLLK 44


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 711  FSTRSRMFFCITRILSSGWAIV 776
            F+ +S +   + +ILS+G+A++
Sbjct: 962  FTCKSNIQLIVAQILSTGYALI 983


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 711  FSTRSRMFFCITRILSSGWAIV 776
            F+ +S +   + +ILS+G+A++
Sbjct: 962  FTCKSNIQLIVAQILSTGYALI 983


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 711  FSTRSRMFFCITRILSSGWAIV 776
            F+ +S +   + +ILS+G+A++
Sbjct: 962  FTCKSNIQLIVAQILSTGYALI 983


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 711  FSTRSRMFFCITRILSSGWAIV 776
            F+ +S +   + +ILS+G+A++
Sbjct: 962  FTCKSNIQLIVAQILSTGYALI 983


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 567 SPARNGMFGPDPMHHSINRAMHTFTHINHFFIRN 466
           S     M   +PM H + +    FT  NH F  N
Sbjct: 340 SSDHQAMLHHNPMSHHLKQEPSGFTSSNHPFSIN 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,589
Number of Sequences: 336
Number of extensions: 3896
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)