Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1924
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.3  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   7.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   7.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.3  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   9.3  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 291 AFCQVFHKYRPDAVNGDAKVKHNGQVNGNL 380
           AFC + H++RPD ++ +   K N + N  L
Sbjct: 158 AFCALIHQHRPDLLDYNKLDKKNHRANMQL 187


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 264 NYDLPRDDEAFCQVFHKYRPDAVNGDAKVKHNGQVNGNLNGVEN 395
           NY LP+DD     + H  + +  +G  + + +        G EN
Sbjct: 750 NYPLPKDDHELEDMIHDEQQETKSGHEQFREHAMKEKEKKGKEN 793


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +2

Query: 344 EGQTQRSS*WEFKRCRKLRYNVKSLVNFRYGVARTQIS*LILRMKK*FICVNVCMAR 514
           +G  +R S W+  RC+K+   +  L+N    V   ++   +      + C +V +++
Sbjct: 78  KGLFRRQSNWKDGRCKKVESMLPQLLNSEKSVGEDRLGLTLTHQNNIYFCNDVQISK 134


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 248 NQAAPIALDTFKRTSSNSHFTFLALSSFSIPGFNTSQLFH 129
           N A P      +  S  ++  FL L SFSI G    +LFH
Sbjct: 405 NYAYPFGFAKIEALSGFTNGIFLVLISFSIVGEALYRLFH 444


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 358  LCLTFASPLTASGRYLWN 305
            L L +AS L ASG++LW+
Sbjct: 1555 LTLAYASQLEASGQWLWS 1572


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 224 DTFKRTSSNSHFTFLALSSFSIPGFNTSQLF 132
           D++ RT +   F+F  L+  S+ GF +  +F
Sbjct: 93  DSYPRTGNVPTFSFTELNDTSVSGFGSQAVF 123


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   HTKVTSYRGISSPKLVVRYGSRGCAGQT 86
           H +V  Y GI  P+ V+ +G  GC G+T
Sbjct: 196 HPEVYQYTGIHPPRGVLLHGPPGC-GKT 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,326
Number of Sequences: 5004
Number of extensions: 66522
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)