Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1924
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    31   0.78 
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248...    29   3.2  
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823...    29   5.5  
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003     29   5.5  

>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 GSVWNSWDVLKPGMLNELNAKKVK 192
           GS++  WD+L P  + E NAKK K
Sbjct: 202 GSMYTDWDILPPRKIKESNAKKPK 225


>01_06_1654 -
           38924090-38924101,38924183-38924215,38924737-38924829,
           38924909-38924965,38925048-38925143,38925237-38925304,
           38925429-38925486,38925572-38925658,38925935-38925982,
           38926060-38926116,38926200-38926458,38926666-38926858,
           38926991-38927098,38927849-38927957
          Length = 425

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 GSVWNSWDVLKPGMLNELNAKKVK 192
           GS++  WD+L P  + +++AKK K
Sbjct: 202 GSMYTDWDILPPRKIKDVHAKKPK 225


>07_03_0883 +
           22280381-22280708,22282008-22282078,22282228-22282345,
           22282406-22282521,22283946-22284023,22284123-22284242,
           22284332-22284391
          Length = 296

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 93  GAPSGQRNHVSRNALPASAKICLDSSSPLY 4
           GAP+G  + V+++ LPA  ++ LD  + LY
Sbjct: 78  GAPAGSISSVAKSLLPARRRLRLDPPNKLY 107


>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
          Length = 385

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 157 PVSTRPSCSTPIQRRRLSAFWRCSVWPAQP 68
           P S RP  STP+ RRR +  + C V P +P
Sbjct: 60  PPSFRP-LSTPLTRRRAATTFLCRVGPGKP 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,371,050
Number of Sequences: 37544
Number of extensions: 465292
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)