Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1924
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 30 2.1
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical pr... 29 3.7
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 5.0
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 5.0
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 5.0
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 5.0
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 29 5.0
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 291 AFCQVFHKYRPDAVNGDAKVKHNGQVNGNLNGVENCGITLSLL 419
A C V H YRPD + + + ++G ++ ++ +L+L+
Sbjct: 365 ALCAVLHSYRPDLIGDYETLDISNNMSGRISNIQRALDSLTLI 407
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 291 AFCQVFHKYRPDAVNGDAKVKHNGQVNGNLNGVENCGITLSLL 419
A C V H YRPD + + + ++G ++ ++ +L+L+
Sbjct: 365 ALCAVLHSYRPDLIGDYETLDISNNMSGRISNIQRALDSLTLI 407
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVNGNLN 383
+D AFC + H++RPD + D H G NLN
Sbjct: 180 KDGLAFCALIHRHRPDLL--DYSQLHKGDPIHNLN 212
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVNGNLN 383
+D AFC + H++RPD + D H G NLN
Sbjct: 180 KDGLAFCALIHRHRPDLL--DYSQLHKGDPIHNLN 212
>Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical
protein C10C6.7b protein.
Length = 223
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 690 PTTSPVLELISAV*AGYV*FYLLFEF*AYIGNLDCSQVPYPSPARNGMFGPDPMHHSIN 514
PTTSP++ ++ + Y + F + Y+ + C V R G+ GP P SIN
Sbjct: 162 PTTSPIILIVIPILV-YAGALMFFIYNMYMV-VKCITVIRGDSGRGGLDGPQPSERSIN 218
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVN 371
RD AF + HK+RPD V+ D K N N
Sbjct: 189 RDGLAFNALIHKHRPDLVDYDNLQKSNALYN 219
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVN 371
RD AF + HK+RPD V+ D K N N
Sbjct: 189 RDGLAFNALIHKHRPDLVDYDNLQKSNALYN 219
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVN 371
RD AF + HK+RPD V+ D K N N
Sbjct: 189 RDGLAFNALIHKHRPDLVDYDNLQKSNALYN 219
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVN 371
RD AF + HK+RPD V+ D K N N
Sbjct: 189 RDGLAFNALIHKHRPDLVDYDNLQKSNALYN 219
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 RDDEAFCQVFHKYRPDAVNGDAKVKHNGQVN 371
RD AF + HK+RPD V+ D K N N
Sbjct: 189 RDGLAFNALIHKHRPDLVDYDNLQKSNALYN 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,524
Number of Sequences: 27780
Number of extensions: 382082
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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