Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1923
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   5.4  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.2  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   9.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 440 ERMESSRRRPKTRHFGSSRSTNGAFRYLKH-RSPFSSNPS--LATKGSTSK*THRHSALR 270
           +RM +S      + FG  R+ N A   L+H RS  S +PS  L+ + ST + +   SA  
Sbjct: 663 QRMSNSFASQTKQVFGEQRTENSARESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASS 722

Query: 269 FS 264
            S
Sbjct: 723 LS 724


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 432 HSFRRIGNVVTDGHDERVLVSCRFIEWRSFQRFLIIKRSKVSYK 563
           H++ + G  VT   DE V +   F+ W   +RF  I    +SYK
Sbjct: 815 HNYLKDGPYVTA--DEAVAIYTTFVHWLESRRFQPIPFPPLSYK 856


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 218 QNLPPDRKRDSLKDLARNGVRCVYGFIYSSSPSSQATGS 334
           QN PPD K   L  +A +GV  V G  Y+S+   + T S
Sbjct: 226 QNFPPDAKFGVLMAMAISGVSSV-GISYTSAWCVRVTSS 263


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 431 ESSRRRPKTRHFGSSRSTNGAFRYLKHRSPFSSNPSLATK 312
           E +R R  T H  S    N +       SPF+S+ SLA+K
Sbjct: 19  ERARNRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLASK 58


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 509 LDKAAGHENPLIVAVGNYIPDPAERMESSRRRPKTRHFGS 390
           L K A +  P++++ G ++P P+ R + +       HF +
Sbjct: 73  LVKIASNLGPMVISDGLHVPHPSNRFDFALSIAVIHHFSN 112


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 155 ELTRLKPDDVANTNPSKSRAWQN 223
           E+ +L P  V + +P+K R W++
Sbjct: 597 EIVQLTPQQVISADPAKRREWES 619


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 409 KHVISDPPDPLTVL 368
           +H++ +PP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,610
Number of Sequences: 5004
Number of extensions: 54921
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)