Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1923
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    33   0.26 
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916...    31   1.1  
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    31   1.1  
10_07_0186 - 13912973-13913015,13913467-13913773,13913983-139140...    28   9.9  

>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 464 GNYIPDPAERMESSRRRPKTRHFGSSRSTNGAFR-YLKHRSPFSSNPSLATKGSTSK*TH 288
           G Y+ D + R  S  R P++R+   S S + A R Y  HR  +S   SL+  G   K  H
Sbjct: 155 GRYM-DGSHRRRSVSRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQ-DKRHH 212

Query: 287 RHSALRFSPN 258
           R +    SP+
Sbjct: 213 RSNGRSASPD 222


>12_01_0924 +
           9161155-9161646,9161748-9162164,9162250-9162313,
           9162621-9163030
          Length = 460

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +2

Query: 149 LGELTRLKPDDVANTNPSKSRAWQNLPPDRKRDSLKDLARNGVRCVYGFI--YSSSPSSQ 322
           LG L  + PDD+  TN  ++R W      +  D          + VY  I  +S   SSQ
Sbjct: 118 LGILKAMLPDDIL-TN--RTRNWARARVKKNSDGTLTFPNAEDQAVYQKIRQFSQEVSSQ 174

Query: 323 ATGSMRTVTGA*GT*KHR*WIGRIRNDVFW 412
                  +T A G  +HR WI  I +D+ W
Sbjct: 175 RWDD-DILTVALGNEEHRGWISGIGSDIPW 203


>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
 Frame = +3

Query: 432 HSFRRIGNVVTDGHDERVLVSC--RFIEWRSFQRFLII-KRSKVSY 560
           HS+  I N+ T G + ++L     ++  W+SF R+LII KRS++SY
Sbjct: 347 HSYHAI-NLATSGGNIQLLFEEHEQYSAWKSFIRYLIINKRSRLSY 391


>10_07_0186 -
           13912973-13913015,13913467-13913773,13913983-13914043,
           13914124-13914299,13914393-13914450,13914709-13914776,
           13915591-13915666,13916523-13916627,13916711-13916768,
           13916874-13917031
          Length = 369

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 167 LKPDDVANTNPSKSRAWQNLPPDRKRDSLKDL-ARNGVRCVYGFIYSSSPSSQATGSMRT 343
           LK D+V      +  AW  LPPD   +S++ L  +NG +    + Y    ++QA G  R 
Sbjct: 153 LKLDEVVARIEERIAAWTFLPPD-NGESIQILHYQNGEKYEPHYDYFHDKNNQALGGHRI 211

Query: 344 VT 349
            T
Sbjct: 212 AT 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,386
Number of Sequences: 37544
Number of extensions: 341043
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)