Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1923
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-P...    30   3.2  
AY118395-1|AAM48424.1|  268|Drosophila melanogaster RE53819p pro...    29   5.6  
AE014296-1702|AAF50232.1|  268|Drosophila melanogaster CG18179-P...    29   5.6  
AY075436-1|AAL68251.2|  231|Drosophila melanogaster LP09717p pro...    29   9.8  
AE014296-1703|AAF50231.1|  264|Drosophila melanogaster CG18180-P...    29   9.8  

>AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-PA
            protein.
          Length = 2768

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 545  SFDY*ESLKRSPLDKAAGHENPLIVAVGNYIPDPAERMESSRRRPKTRHFGSSRST 378
            S D  +  K +  D    HE P + AV + IP P+E    +   P   H  SS +T
Sbjct: 2483 SADKKDKNKETEEDTDKKHEEPEVPAVVSEIPQPSEEAVPTTGHPLFPHLASSTTT 2538


>AY118395-1|AAM48424.1|  268|Drosophila melanogaster RE53819p
           protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 401 HFGSSRSTNGAFRYLKHRSPFSSNPSLATKG 309
           H+GS+   NGAFR    R  F S+P+   +G
Sbjct: 95  HYGSNWGWNGAFRQSVRRDNFISHPNWPAEG 125


>AE014296-1702|AAF50232.1|  268|Drosophila melanogaster CG18179-PA
           protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 401 HFGSSRSTNGAFRYLKHRSPFSSNPSLATKG 309
           H+GS+   NGAFR    R  F S+P+   +G
Sbjct: 95  HYGSNWGWNGAFRQSVRRDNFISHPNWPAEG 125


>AY075436-1|AAL68251.2|  231|Drosophila melanogaster LP09717p
           protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 401 HFGSSRSTNGAFRYLKHRSPFSSNPSLATKG 309
           H+GS+   NGA+R    R  F S+P   ++G
Sbjct: 92  HYGSNWGWNGAYRQTVRRDNFISHPDWPSQG 122


>AE014296-1703|AAF50231.1|  264|Drosophila melanogaster CG18180-PA
           protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 401 HFGSSRSTNGAFRYLKHRSPFSSNPSLATKG 309
           H+GS+   NGA+R    R  F S+P   ++G
Sbjct: 91  HYGSNWGWNGAYRQTVRRDNFISHPDWPSQG 121


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,951,659
Number of Sequences: 53049
Number of extensions: 574116
Number of successful extensions: 1537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)