Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1923
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical
           protein T27A3.5 protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 532 KNR*KDLHSIKRQDTRTLSSWPSVTTFPILRKEWKAVDVAPKHVISDPPDPLTV 371
           KNR KD++ I   DTR +  WP  +    +   W  ++ A K + +  P   TV
Sbjct: 101 KNRYKDVYCI--DDTRVVLKWPEDSPSDYIHANWVKINGANKFICTQGPTEKTV 152


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/81 (24%), Positives = 31/81 (38%)
 Frame = -1

Query: 512 PLDKAAGHENPLIVAVGNYIPDPAERMESSRRRPKTRHFGSSRSTNGAFRYLKHRSPFSS 333
           PLD   GH  P + A       P      S+  PK +  G+   + G+    K  +P + 
Sbjct: 550 PLDSGTGHSRPALFA-------PPRAQLPSQSVPKAQAHGAKSHSRGSGESKKKSAPLNG 602

Query: 332 NPSLATKGSTSK*THRHSALR 270
           N  +  K   S  T R   ++
Sbjct: 603 NTEIVKKTRGSGSTKRRRVVK 623


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 443 AERMESSRRRPKTRHFGSSRSTNGAFRYLKHRSPFSSNPSLATKGSTS 300
           +  + SS R+P    F SS S+NG+       S  SSN S ++ GSTS
Sbjct: 94  SSNISSSSRQPSNGSFRSSGSSNGS----SSSSRRSSNGSSSSSGSTS 137


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical protein
            D2005.4 protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 173  PDDVANTNPSKSRAWQNLPPDRKRDSLKDLARNGVRCVYGF 295
            PD+V      +  +   +  D ++  LK LA+ G  C+YGF
Sbjct: 964  PDNVKVERKEEDESIDGVSCDNEKIPLKPLAQCGKNCLYGF 1004


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 466 SVTTFPILRKEWKAVDVAPKHVISDPPDPLTVL 368
           S+ +  ++R E KA+D  P  +ISDP   L  L
Sbjct: 135 SIGSEVVMRSEPKAIDRTPSTIISDPAPVLKAL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,247
Number of Sequences: 27780
Number of extensions: 299700
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)