Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 506 HSMPLTTVNK--HAQTPTTSSHDVRKHKI 426
           HS P+TT NK  H ++P+     V   KI
Sbjct: 237 HSAPITTCNKKQHLESPSALQAKVDPLKI 265


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
 Frame = -1

Query: 174 NPPAQSCDCNDHYLDFQCYTTN----KVIGARSEHC 79
           NP   +  C D   DF+C   N    K    +  HC
Sbjct: 113 NPCRNNGSCVDRIADFECNCKNGWKGKTCSLKDSHC 148


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 634 IVFLCCYY*IHRFQILTV 581
           I+ LC YY  + F I TV
Sbjct: 108 IILLCVYYFYYAFIIFTV 125



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 634 IVFLCCYY*IHRFQILTV 581
           I+ LC YY  + F + TV
Sbjct: 233 IILLCIYYFYYAFILFTV 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,884
Number of Sequences: 336
Number of extensions: 4234
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)