Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    30   0.33 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   7.0  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   9.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   9.3  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -1

Query: 225 DFQFEKLRHCHFTHERKNPPAQSCDCNDH---YLDFQCYTTNKVIGARS 88
           D  F    +CH  H  + P A  C   D+   YLD  C   N  IG R+
Sbjct: 175 DSVFVNTVYCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRN 223


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 451 LEVVGVCACLLTVVSGMLCVRTE 519
           LEV G C  L  V+SG LC+R++
Sbjct: 573 LEVFGTC--LTKVLSGSLCIRSD 593


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 696 PLTIRWVVRSSAYKDNKKKPP*F 628
           P+ I W    S ++ NKK PP F
Sbjct: 139 PVDIHWKPGKSLFRKNKKLPPNF 161


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 518 SVRTHSMPLTTVNKHAQTPTTSSHDVRKHKIQ 423
           S+R  ++     NK ++T +T SH+ R+ K+Q
Sbjct: 14  SIRQANLGTRPNNKKSRTRSTESHEDRQAKVQ 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,826
Number of Sequences: 5004
Number of extensions: 66947
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)