Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0202 - 19010953-19013355                                         29   4.2  
10_08_1043 + 22524322-22524346,22524931-22525028,22525287-225253...    29   5.5  
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141...    28   9.7  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    28   9.7  

>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 25/69 (36%), Positives = 33/69 (47%)
 Frame = +3

Query: 381 SDNDAVCQTENRLILNFMFADIVTRGGWCLCVFIDSCQWHAVRTNGAVAAMDRAYMSLRA 560
           S+N AV QT  R I NF+F   V+ G   L +  D C   A    G+V+  DR  ++ R 
Sbjct: 595 SENSAVLQTRLRQIRNFLFILFVSLGVPVLNMG-DECGHSAA---GSVSYKDRGPLNWRG 650

Query: 561 RKPQAGKTV 587
            K    K V
Sbjct: 651 MKTTFVKEV 659


>10_08_1043 +
           22524322-22524346,22524931-22525028,22525287-22525384,
           22525878-22525935,22526642-22526743,22526840-22526901,
           22527441-22527519,22527669-22527788,22527869-22527982,
           22528749-22528883
          Length = 296

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +1

Query: 499 MLCVRTERLRPWTAPTCPCAPGNRRQAKRLIFETCEFSSSNIRKLWRFFFIVLVGRRSHD 678
           ++ +  ER  PW +       G+R     L  +     S   + +W        GR   D
Sbjct: 111 IIALLLERSNPWISENIVYVAGDRVVTDPLC-KPFSMGSGGSQIIW---IAPSGGRDRPD 166

Query: 679 PPDGEWLPSPMDFS 720
           P  GEW P+P D S
Sbjct: 167 PLTGEWHPAPFDAS 180


>04_04_1292 -
           32413046-32413807,32413901-32413936,32414037-32414179,
           32414263-32414419,32414518-32414679,32414860-32415107,
           32415589-32415733
          Length = 550

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = -2

Query: 380 LLTHTNAKTRQSELRLQRSLFRFTACH*QLSINTHKHQPPRVLRKHKIQN*SIFNLRNCV 201
           +L    A +  S+  LQ +L +F A   + S  TH  Q  R+  +H  Q  S+ N    V
Sbjct: 349 ILADKIAASSNSQQILQSALSKFAAEEAKNSSETH--QDKRLKIEHSSQVPSVANAAAFV 406

Query: 200 IVTSHTNAKTRQPKAV 153
            +   T+   +QP+A+
Sbjct: 407 PMPQMTSTTAQQPQAI 422


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 471 CVFIDSCQWHAVRTNGAVAAMDRAYMSLRARKPQAGKTVNI 593
           C F+ +    A+ TNGA+      Y+  RA  P+ G ++ +
Sbjct: 110 CTFLTTISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGL 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,961,414
Number of Sequences: 37544
Number of extensions: 468568
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)