Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 31   1.1  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 30   2.4  
SB_54457| Best HMM Match : EGF (HMM E-Value=4.6e-31)                   28   9.9  

>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 529 PWTAPTCPCAPGNRRQAKRLIFETCEFSSSNIRKL 633
           PW+A +  C PG    +  ++ +TC FSS  ++ L
Sbjct: 571 PWSACSKACGPGQCLMSANIVLKTCGFSSRFLKIL 605


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -1

Query: 312 YSMPLTTVNKHAXXXXXXXXXXXXXSKLIDFQFEKLRHCHFT----HERKNPPAQSCDCN 145
           YS+PL T +  A               +    +   + C+F     H RK+ PA++C CN
Sbjct: 141 YSVPLQTASVSAVPEQIEAQNPDHEVPVTAAAYRPSKRCYFCGGPLHNRKDCPAKNCSCN 200

Query: 144 D 142
           +
Sbjct: 201 N 201


>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 522

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 643 FFIVLVGRRSHDPPDGEWLPSPMD-FSNARGRSKPLPTALYF 765
           FF  +   R+HDPP  +  PS +   S  RGR K LP  + F
Sbjct: 97  FFTQMTSLRNHDPPPPKRFPSWLSKVSTIRGRRK-LPAVVIF 137


>SB_54457| Best HMM Match : EGF (HMM E-Value=4.6e-31)
          Length = 200

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -1

Query: 156 CDCNDHYLDFQCYTTNKVIGARSEHCVYFEKRAINYVTQTKLSCVIKTG 10
           C+CND+Y    C         +S  C+     +++ V +++ +C+   G
Sbjct: 56  CECNDNYGGINCEARLNNNACQSSPCLNGGTCSVDPVKESEYTCICPNG 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,610,960
Number of Sequences: 59808
Number of extensions: 550109
Number of successful extensions: 1459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)