Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-10|CAE17898.2|  366|Caenorhabditis elegans Hypothetical p...    31   1.2  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    30   2.2  

>Z46381-10|CAE17898.2|  366|Caenorhabditis elegans Hypothetical
           protein M01F1.9 protein.
          Length = 366

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 535 TAPTCPCAPGNRRQAKRLIFETCEFSSSNIRKLWRFFFIVLVGRRSHD 678
           TAP C  +P +  +    +  T  FS+ +++  WR  F+ +V  +++D
Sbjct: 267 TAPICTFSPDSTFRLSIPLTATPTFSTDSVQLKWRIRFVFVVTEKAYD 314


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 682 PDGEWLPSPMDFSNARGRSKPLPTALYFHKPR 777
           P  E  PSPM F     + KP P  +  HKP+
Sbjct: 26  PKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPK 57



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 682 PDGEWLPSPMDFSNARGRSKPLPTALYFHKPR 777
           P  E  P+PM F     + KP P  +  HKP+
Sbjct: 162 PKSEPFPNPMPFPKPMPKPKPKPKPMPKHKPK 193


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 465 CLCVFIDSCQWHAVRTNGAVAAMDRAYMSLRARKPQAGKTVNI 593
           C C F+      AV TNG V +    +M  R   P+ G  V I
Sbjct: 77  CFCTFLTCISISAVATNGVVESGGAYFMISRNLGPEFGSAVGI 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,680,287
Number of Sequences: 27780
Number of extensions: 407887
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)