Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1920
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   7.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   7.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   7.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 679 PPDGEWLPSPMDFSNARG 732
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 370 TRTQKPDSRNCDCNDHYLD-LQHATD 296
           T T      +CDC+D + D L+++ D
Sbjct: 79  TNTASHTRLSCDCDDKFYDCLKNSAD 104


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 370 TRTQKPDSRNCDCNDHYLD-LQHATD 296
           T T      +CDC+D + D L+++ D
Sbjct: 84  TNTASHTRLSCDCDDKFYDCLKNSAD 109


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 533 HGRNRSVRTHSMPLTTVNKHAQTPTTSSHDVRKH 432
           H    S  TH M L++  +H   P   SH    H
Sbjct: 45  HYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHH 78


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 370 TRTQKPDSRNCDCNDHYLD-LQHATD 296
           T T      +CDC+D + D L+++ D
Sbjct: 84  TNTASHTRLSCDCDDKFYDCLKNSAD 109


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 671 RTTHLMVSGYRRPWTSAMP 727
           R+THL VSG  R  ++  P
Sbjct: 386 RSTHLKVSGINRVGSTRRP 404


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 655 LVGRRSHDPPDGEWLP 702
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,102
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)