Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1918
         (794 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VGK1 Cluster: CG18476-PA; n=4; Sophophora|Rep: CG1847...    35   2.7  
UniRef50_UPI00006CD596 Cluster: hypothetical protein TTHERM_0051...    34   4.7  
UniRef50_A6RPK8 Cluster: Predicted protein; n=1; Botryotinia fuc...    33   8.3  

>UniRef50_Q9VGK1 Cluster: CG18476-PA; n=4; Sophophora|Rep:
           CG18476-PA - Drosophila melanogaster (Fruit fly)
          Length = 936

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 14/72 (19%), Positives = 33/72 (45%)
 Frame = +3

Query: 387 IYNLKYRKYNC*RCRISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAHR 566
           ++  + R Y+C  C   + +   L++   ++  ++ + N + H+K         K H ++
Sbjct: 226 VHKPETRLYDCSLCIRKFSRSEALEAHLKIHRNSKRSANISEHKKAKAVDLNLCKPHGYK 285

Query: 567 FIIARICRRAYD 602
            I   IC+  Y+
Sbjct: 286 LIECMICQSQYN 297


>UniRef50_UPI00006CD596 Cluster: hypothetical protein TTHERM_00510160;
            n=2; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00510160 - Tetrahymena thermophila SB210
          Length = 1184

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 453  QLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAHRFIIARICRR 593
            Q+QSQ+  N +N  N+N+  ++   F +  CTKL      I R  R+
Sbjct: 895  QVQSQNQRNSQNNNNNNSKENKLNDFVTSQCTKLRMSDSQINRTIRK 941


>UniRef50_A6RPK8 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 963

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 432 ISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAHRFI 572
           IS     QL+S  D++     +HNTT+H++R++T FT T     R I
Sbjct: 214 ISPTSTPQLESSLDVS---SPHHNTTSHKQRNYTEFTFTAPAPKRII 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,624,589
Number of Sequences: 1657284
Number of extensions: 14746566
Number of successful extensions: 35197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35178
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)