Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1918
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   3.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   4.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   7.1  

>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 605 TSW*LVIVDHGLQQCL-P*TVKYRL 676
           T+W LV ++HGLQ C+ P T+   L
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHL 225


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 438  YKQHSQLQSQSDLNMKNQENHNTTTHRKR 524
            YK+  ++ SQ  L+ +N   H  +T RKR
Sbjct: 1066 YKRCEEIISQMSLDERNTPKHTASTKRKR 1094


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +3

Query: 390 YNLKYRKYNC*RCRISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAHRF 569
           +N  +R+Y   +CR  Y  H +  S +  +   + ++N  T  +R FT+      ++++F
Sbjct: 9   FNFSFRRYCFVQCRNKYHSHVRYLSSAKKSGILRNSYNQRT--ERYFTNIMIPSDYSNKF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,842
Number of Sequences: 5004
Number of extensions: 62136
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)