Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1918
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623...    30   2.4  
08_01_0234 + 1914155-1914326,1914474-1914634,1914757-1914904,191...    29   3.2  
08_01_0230 + 1837700-1837871,1838035-1838195,1838329-1838476,183...    29   3.2  
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    29   4.3  
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850...    29   5.6  
12_01_0900 - 8724339-8724380,8725263-8725376,8726491-8726559,872...    28   7.4  
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405...    28   7.4  
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385     28   9.8  

>03_02_0993 -
           13058785-13059025,13059188-13059264,13062157-13062351,
           13062650-13062811,13062915-13063044,13063082-13063149,
           13063244-13063291,13063383-13063448,13063739-13063818,
           13064644-13064737
          Length = 386

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 547 PSCTRTVLLLPVSADEHTTHLMVIGYRRPWTSAMPTVNREISLALI 684
           P C+R+VL+L  SA +H T+L V      W++    + R  +  L+
Sbjct: 303 PDCSRSVLVLFWSASDHLTYLGVDMEADDWSTCRIVLGRSAAETLL 348


>08_01_0234 +
           1914155-1914326,1914474-1914634,1914757-1914904,
           1915221-1915357
          Length = 205

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 317 SRWPVTVYYAHAFECHAFNLASLSIP 240
           +RW   + Y H +EC AF++    +P
Sbjct: 93  ARWAQPITYLHVYECDAFSIGIFCLP 118


>08_01_0230 +
           1837700-1837871,1838035-1838195,1838329-1838476,
           1838802-1839002,1839301-1839416,1839463-1839501
          Length = 278

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 317 SRWPVTVYYAHAFECHAFNLASLSIP 240
           +RW   + Y H +EC AF++    +P
Sbjct: 93  ARWAQPITYLHVYECDAFSIGIFCLP 118


>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 321 MLALACDSILRACVRVSRIQSRFSFYSPSPGALNV*RNLVGSRIRSYTS 175
           ++ LAC +I+  C R  R+Q+RFSF +   GA       V   ++SY S
Sbjct: 283 LVLLACIAIVYKCRR--RMQNRFSFLNAMDGASRTDTAKVEKLLQSYGS 329


>01_05_0273 -
           20283965-20284085,20284197-20284348,20284828-20285001,
           20285082-20285331,20285782-20285898,20286412-20286474,
           20286568-20286740
          Length = 349

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 268 HSISLLFLFPLPRSVKRLTQPSWKSH*KLHFKNHALWWLMAFCDIY 131
           H+I++LFL P+   V+R T P       L    HAL+ +    +IY
Sbjct: 42  HAIAILFLVPVAFVVERKTAPPLSYKILLKLFVHALYGIAGSVNIY 87


>12_01_0900 -
           8724339-8724380,8725263-8725376,8726491-8726559,
           8726665-8726824,8726905-8726961,8728080-8728258,
           8728332-8728442,8728512-8728535,8729993-8730107,
           8730665-8730720,8731595-8731807
          Length = 379

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 443 TAFTITI-AIRFKYEESRKPQYYYTSKKKFHFIHVHQVARAP 565
           T +T T+  I  K + + KP YY+ +K K + +   Q  R+P
Sbjct: 9   TMYTCTLRCIHEKDDGNSKPSYYWLTKNKDNHVVTPQTKRSP 50


>07_03_0804 -
           21639016-21639231,21639379-21639555,21640120-21640588,
           21640608-21641218
          Length = 490

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 222 LTLLGRGNRKRSEIECVTLERMRVVYCHRPTRALATCSG 338
           L L+     +R ++E   L RMRV YC   TR+    +G
Sbjct: 242 LRLVSVSRLQRLDVEAGNLRRMRVEYCFDETRSCRPWNG 280


>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
          Length = 157

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 658 NREISLALIPTLLSTTRDRFAPQS*QLARATGHAPNRM 771
           +R +S  LI  LL  T D  AP+    ARATG  P  +
Sbjct: 92  SRSLSHFLIFDLLFATTDPMAPRKPTKARATGEDPGSL 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,461,307
Number of Sequences: 37544
Number of extensions: 407254
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)