Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1918
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    29   2.9  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    29   2.9  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      29   2.9  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z98866-7|CAB11549.1|  454|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 396 LKYRKYNC*RCRISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAH 563
           L+Y+ Y C  C +S   H +      L +K  E    +TH  RS  SF C +   H
Sbjct: 606 LQYQGYKCESCNMS--MHKEC-----LGLKKCEAVRKSTHETRSSQSFNCNRPRFH 654


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 396 LKYRKYNC*RCRISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAH 563
           L+Y+ Y C  C +S   H +      L +K  E    +TH  RS  SF C +   H
Sbjct: 638 LQYQGYKCESCNMS--MHKEC-----LGLKKCEAVRKSTHETRSSQSFNCNRPRFH 686


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 396 LKYRKYNC*RCRISYKQHSQLQSQSDLNMKNQENHNTTTHRKRSFTSFTCTKLHAH 563
           L+Y+ Y C  C +S   H +      L +K  E    +TH  RS  SF C +   H
Sbjct: 638 LQYQGYKCESCNMS--MHKEC-----LGLKKCEAVRKSTHETRSSQSFNCNRPRFH 686


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 RPTRALATCSGQYFNVVFEKCIYIYFSIY 392
           +P R ++  + +YF  +F  CI++Y  +Y
Sbjct: 18  KPPRTMSLTTKRYFAFIFSFCIFMYLVLY 46


>Z98866-7|CAB11549.1|  454|Caenorhabditis elegans Hypothetical
           protein Y49E10.9 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 201 QLGCVKRLTLLGRGNRKRSEIECVTLERMRVVYCHRPTRALATCSGQYFNVVFE 362
           ++G VK   +  RG +KR    C  L    +++C  PT  L +       V +E
Sbjct: 238 RIGSVKEKGI-SRGEKKRLAFACEILTDPPILFCDEPTSGLDSFMSHQGKVAYE 290


>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 336 GQYFNVVFEKCIYIYFSIY---NLKY 404
           GQYF  +  +C+ IY  +Y   NL+Y
Sbjct: 73  GQYFGSMLSRCVIIYMQLYPDKNLEY 98


>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 231 LGRGNRKRSEIECVTLERMRVVYCHRPTRAL 323
           L RG RKR    C  L    +++C  PT  L
Sbjct: 244 LSRGERKRLAFACEILTDPPILFCDEPTSGL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,586
Number of Sequences: 27780
Number of extensions: 359800
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)