Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1916
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 31 0.19
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 31 0.25
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 30 0.33
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 4.1
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 5.4
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 26 5.4
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 26 5.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 5.4
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.1
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 7.1
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 7.1
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.19
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Frame = +2
Query: 197 TYFEKRPQEEFGS*RLRGRIINDHIREVKN---GFFCEYCNKYISGPTKIR-----LHIL 352
T+ EK + F N H K GF CE C YI KI H+L
Sbjct: 37 TFIEKGSAQAFYHSLFENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKINHFKSMTHLL 96
Query: 353 ENTHINNK 376
+ HI+NK
Sbjct: 97 SSQHISNK 104
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 466 SNDSMPSCFGDSHIFESNYIISHS 395
S +S CF DS +F+ +Y ISHS
Sbjct: 345 SEESSEMCFADSPLFDPDYCISHS 368
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 150 CLVCGNYFPTEKDANRHISKKGHKKNL 230
C+VC F ++ H + K HKKNL
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNL 298
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 673 SHPKHKQKYQQLERRDAEPNVRVESPVFTADKTG 774
SHPK+K+K Q+ +R E V + + A++ G
Sbjct: 174 SHPKYKEKEQEADRIAKEIEGTVTNNIHIAEERG 207
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 272 REVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLE 394
++ F+CE C K+ T H H NK ++ ++
Sbjct: 237 KDSTEAFYCEVCQKFFGKITVFEAHKKSKAH--NKAVKRMQ 275
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 36 IYLLSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHSCCLVCGNY 170
I +LS V+S +H +LN +A +V V S L+C Y
Sbjct: 53 INILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGY 97
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 150 CLVCGNYFPTEKDANRHISKKGH 218
C +CG EKDA H GH
Sbjct: 301 CTICGTGLVGEKDATAHALATGH 323
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -3
Query: 394 FQVSDALIIDMRVFQNMEPYFGGPR--YVLVTVFTEESVFDLPNVVIYNSSTKPLASKFF 221
F+ D + +R ++N Y+++++ + S FDL + NSST PLA FF
Sbjct: 180 FKAEDLFNLSVRTWKNPSASVHDKALLYLILSIGSAASYFDLQS----NSSTLPLARGFF 235
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 562 FATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKHKQKYQQLER 714
F TH+ + R+ N C C E + + + + L SHP H++ +++ R
Sbjct: 257 FNTHRCIERSTDCN---CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR 304
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 635 LKPLLKYLCHSTFPILSTNKSISN*NVEMLNLTC 736
+K L KY+ FPI N +I N E+LN +C
Sbjct: 234 IKELAKYIDPKLFPIEIVNDNID--NPELLNNSC 265
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 157 SVAITSPLRRMLTDIFRKKATRRIWKLTASWKN 255
S+ PLR L DI + + R W + ASW N
Sbjct: 493 SLNAREPLRVTLEDIEQIETKGRWWLVGASWNN 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,762
Number of Sequences: 5004
Number of extensions: 77686
Number of successful extensions: 235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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