Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1916
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 31 1.0
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 30 2.4
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 29 4.2
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 29 4.2
01_06_1495 + 37769982-37771496 29 4.2
09_02_0392 + 8504856-8505041,8505099-8505143,8505836-8506404,850... 28 7.4
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 28 7.4
08_01_1026 - 10366534-10368021,10368505-10368525 28 9.8
07_01_0128 + 956953-957166,957657-958309 28 9.8
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 28 9.8
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +2
Query: 263 DHIREVKNGFFCEYCNKYISG--PTKIRLHI 349
+H + NGF C+YC++ SG T++++H+
Sbjct: 10 EHGESIGNGFHCKYCHQQKSGGRATRLKIHL 40
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 217 TRRIWKLTASWKNYK 261
TRRIW+LTASW Y+
Sbjct: 658 TRRIWRLTASWVAYQ 672
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 150 CLVCGNYFPTEKDANRHISKKGHKKNLE 233
CL C YF +E H K HKK ++
Sbjct: 66 CLHCDRYFASESVKEEHYRSKRHKKRIK 93
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 245 RGRIINDHIREVKNGFFCEYCNKYISGPTKIRLHILENTHINNK 376
R + I ++E++ FFC CNK + H+ H + K
Sbjct: 187 REQKIRSEVKEIQKVFFCSLCNKQYKLAHEFESHLSSYDHNHRK 230
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 90 SKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGH 218
S ++ +L + IL H C L+CG F ++DAN + +GH
Sbjct: 247 SYVVLQLEKEEILAPHTHFC-LICGKGF--KRDANLRMHMRGH 286
>09_02_0392 +
8504856-8505041,8505099-8505143,8505836-8506404,
8509267-8509585
Length = 372
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 117 NAILVGKVHSCCLVCGNYFPTEKD-ANRHISKKGHKKN 227
N ++ GK+ C +C NY + H+ ++G K+N
Sbjct: 118 NVVVSGKIKCPCSLCRNYVSHRRQMVEMHLCREGFKEN 155
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 322 RYVLVTVFTEESVFDL--PNVVIYNSSTKPLASKFFLWPFFEICL 194
+Y++V V+ S L P IY +S + + + ++ FF +CL
Sbjct: 3 KYIIVQVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFSLCL 47
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 269 IREVKNGFFCEYCNKYISGPTKIRLHILENTHINNKG 379
+RE CE C SG T + LH+ H + G
Sbjct: 461 LREANGALLCEPCGVRCSGKTDMVLHLYTKEHSDKCG 497
>07_01_0128 + 956953-957166,957657-958309
Length = 288
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 217 TRRIWKLTASWKNYK 261
TRRIW LTA+W Y+
Sbjct: 232 TRRIWSLTAAWVAYQ 246
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 111 NRNAILVGKVHSCCLVCG 164
N N + GK HSCCL CG
Sbjct: 130 NDNNQVCGKRHSCCLRCG 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,006,491
Number of Sequences: 37544
Number of extensions: 443694
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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