Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1916
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-12|CAJ85750.1|  205|Caenorhabditis elegans Hypothetical p...    31   0.71 
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    31   0.94 
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical ...    30   2.2  
AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    29   2.9  
U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    28   6.7  
AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine re...    28   6.7  
AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    28   6.7  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    28   8.8  
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila odd-...    28   8.8  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    28   8.8  

>Z78198-12|CAJ85750.1|  205|Caenorhabditis elegans Hypothetical
           protein F55C5.11 protein.
          Length = 205

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 45  LSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHSCCLV-CGNYFPTEKDANRHISKKGHK 221
           L R ++    S S   K   K++ +A+ + ++H+C +  CG  F + +  NRH S    K
Sbjct: 103 LKRRVACDICSKSFCDKGALKIHTSAVHLREMHTCTVTGCGKQFSSRRSRNRHSSNNNPK 162

Query: 222 KNL 230
            ++
Sbjct: 163 LHM 165


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 78  HSRTSKMIPKLNRNAIL-VGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEE 254
           H + + ++  L+R+A L   K   CC  CG  F     A+ HI +   +  L+ + F  E
Sbjct: 221 HGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRYLASTHIKEVHGEPKLQPHDFAAE 280

Query: 255 L 257
           L
Sbjct: 281 L 281


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 78  HSRTSKMIPKLNRNAIL-VGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEE 254
           H + + ++  L+R+A L   K   CC  CG  F     A+ HI +   +  L+ + F  E
Sbjct: 221 HGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRYLASTHIKEVHGEPKLQPHDFAAE 280

Query: 255 L 257
           L
Sbjct: 281 L 281


>AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical
           protein Y39A3B.3 protein.
          Length = 215

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 129 LRSHSCSASVSSLRFANVNQLLYLKHEIIDKYTE 28
           ++   C    S LRF    Q+ YLK+EII+ ++E
Sbjct: 66  MKQDICGHGASELRFTLKTQIKYLKNEIINFFSE 99


>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +2

Query: 314 YISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIK 493
           Y   PT I L +L++T+     + ++  +    V  +N  +A      +V  TC++C++ 
Sbjct: 131 YWGVPTLISLVVLKDTNFKYDSLESMSIIAEQEVIKRNTLMALI----VVSLTCILCSLA 186

Query: 494 FG 499
           +G
Sbjct: 187 YG 188


>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 CGNYFPTEKDANRHISKKGHKKNLE--ANGFVEEL 257
           C   F T+++ N H SK GHK++ +   N +++++
Sbjct: 36  CDMGFYTQQELNAHCSKHGHKRSFQKTVNPYIDKM 70


>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 290 FFCEYCNKYISGPTKIRLHILENT 361
           + C  CNK+I  P+KI  HI ++T
Sbjct: 71  YHCVQCNKHIKYPSKITEHIRKHT 94



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 296 CEYCNKYISGPTKIRLHILENTHINNK 376
           CEYC +    P+KIR H+   TH   K
Sbjct: 453 CEYCGRVDKYPSKIRAHM--RTHTGEK 477


>Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical
           protein F58G1.2 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +2

Query: 272 REVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAW 451
           R   +GF C  CN+    P K+R H  +  H+ ++  +         ++   VTI +   
Sbjct: 309 RGYHSGFRCPDCNQKFLTPRKLRKH-RKMAHVFSRTFQ-CHFCEEFFISDTAVTIHERVH 366

Query: 452 HGIVGHTCLICNIK 493
            GI+   C +C+ +
Sbjct: 367 TGILKFECTVCDFR 380


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 326 PTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFG 499
           PT I   +L++T  +      +  + +  V  +N  +A      +VG TC++C++ +G
Sbjct: 150 PTVISAVVLKDTDFSYDSFERMAIIADQDVIQRNTLMALV----VVGLTCILCSLAYG 203


>AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein130 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 304 VFTEESVFDLPNVVIYNSSTKPLASKFF-LWPFFEICLLASFSV 176
           V T E +F    +V+Y SSTK  + K + L   F ICL    ++
Sbjct: 206 VITGEVIFYFTRIVVYLSSTKAKSQKTYKLQLHFFICLTIQITI 249


>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 326 PTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDM 505
           PT I L +L++ + +   I  +  V    V  +N  +A      +VG TC +C+I +G +
Sbjct: 148 PTIISLVVLKDINFHYDNIVVMTVVAEKSVIQRNTLMALI----VVGLTCALCSISYGAL 203

Query: 506 EFTFL 520
            F F+
Sbjct: 204 -FLFI 207


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = +2

Query: 275 EVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWH 454
           +V+N    +    Y S PT I + +L++   +   +  +  +    V  +N  +A     
Sbjct: 129 KVQNASKLQIITVYWSVPTIISIVVLKDYKFSYDNLEAMSIIAEQDVIKRNTLMALI--- 185

Query: 455 GIVGHTCLICNIKFGDM 505
            +V  TC++C++ +G +
Sbjct: 186 -VVSLTCILCSVLYGSL 201


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 272 REVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAW 451
           R   +GF C +CN     P K+R H  + +H+  K  +        I   +   +     
Sbjct: 407 RGANSGFRCSFCNMKFLTPRKLRKH-KKMSHVFTKTFQC--HFCEEIFISEVAVMTHERM 463

Query: 452 H-GIVGHTCLICNIK 493
           H GI+   C +C+ +
Sbjct: 464 HTGIIKFECKVCDFR 478


>U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila
           odd-skipped-like protein1 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 260 NDHIRE-VKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTI 436
           N+ IR+  K  F C+YC ++ +    + +H  E TH N +   + E  G +     ++  
Sbjct: 117 NNAIRKRPKKEFICKYCARHFTKSYNLMIH--ERTHTNERPF-HCETCGKSFRRQDHLRD 173

Query: 437 AKAAWHGIVGHTCLICNIKF 496
            K        H C IC   F
Sbjct: 174 HKYIHAKEKPHKCEICGKGF 193


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 138 VHSCCLVCGNY-FPTEKDANRHISKKGHKKNLEANG 242
           VH  CL  GN  F  +   + H  KKGHK N  A+G
Sbjct: 212 VHQQCL--GNKSFNAQAGVHGHAFKKGHKDNKNASG 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,963
Number of Sequences: 27780
Number of extensions: 420177
Number of successful extensions: 1311
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)