Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1916
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    31   0.016
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.037
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.61 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   2.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 487 IADQAGMSNDSMPSCFGDSHIFESNYIISHSFQVSDALIID 365
           IA   G+   +  S + D  + E+N  + HSFQ+ +  I+D
Sbjct: 321 IATHMGLDTRTSTSLWKDKAMIEANVAVLHSFQMKNVTIVD 361


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 290 FFCEYCNKYISGPTKIRLHILENTHI--NNKGIRNL-ERVGNNIVAFKN 427
           F CE CNK ++  T++R HI +N H   + + I N+ +RV +++ + +N
Sbjct: 3   FRCEPCNKILTSLTRLRRHI-QNVHTRPSKEPICNICKRVYSSLNSLRN 50


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 275 EVKNGFFCEYCNKYISGPTKIRLHILENT 361
           + K  F C+YC K       +++HI  +T
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTHT 40


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 LVCGNYFPTEKDANRHISK 209
           L  G YFP+   AN H SK
Sbjct: 40  LFVGTYFPSLIGANEHYSK 58


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 475 AGMSNDSMPSCFGDSHIFESN 413
           +G+ N++ P C    H+F+ N
Sbjct: 144 SGIINNTQPMCSPKLHVFDLN 164


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 RQDSRSGLSPLRSHSCSASVSSL 91
           ++DS   L+P R HS +AS   L
Sbjct: 397 QEDSEEHLTPKRFHSRAASKEDL 419


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 RQDSRSGLSPLRSHSCSASVSSL 91
           ++DS   L+P R HS +AS   L
Sbjct: 397 QEDSEEHLTPKRFHSRAASKEDL 419


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 404 NNIVAFKNVTIAK 442
           NNI AF+NV + K
Sbjct: 5   NNIAAFQNVVLVK 17


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 296 CEYCNKYISGPTKIRLH 346
           CEYC+K  S    + +H
Sbjct: 122 CEYCSKSFSVKENLSVH 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,742
Number of Sequences: 438
Number of extensions: 5132
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)