Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1915
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.87 
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    26   6.1  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -2

Query: 316  LLIKEDLQHDFVITSIFLIISNLNYDRTI*R*LKHCCVPC*YRFST----SDDLMITADC 149
            LL++ ++ H F +TS  L+   LN DR     +           ST    +D+  +   C
Sbjct: 958  LLLRSEIAHIFAMTSHLLLHELLNEDREALSVISEFLKDLKGFLSTPNVQADEKYLKLRC 1017

Query: 148  FFNKTIEKCVQTEVIHLS 95
            +F++ +EK +  + +H S
Sbjct: 1018 YFSQLLEKVLLVQNLHPS 1035


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 12  KISMQILNSLFKALFSLVTQKHLNIHI*DKWITSV*THF 128
           ++   IL   F  +FS +TQK  N  I  +W  S+ + F
Sbjct: 50  RLEFVILACFFLYVFSFITQKKKNQKIASRWYGSLQSSF 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,659
Number of Sequences: 5004
Number of extensions: 58084
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)