Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1915
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006...    28   8.4  

>08_02_0306 -
           15599409-15599657,15600326-15600475,15600574-15600663,
           15600776-15601126,15601389-15601430,15601523-15601600
          Length = 319

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 184 KNDINMEH-NSVLINVILF-CHNLDWRLLRKC 273
           K D+N+ H N   + V+L  CHNL W  L +C
Sbjct: 101 KLDLNLVHVNRESLEVMLHSCHNLQWLSLVRC 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,724
Number of Sequences: 37544
Number of extensions: 279775
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)