Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1914X
         (613 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245360-1|CAB44936.1|  124|Homo sapiens immunoglobulin gamma he...    33   0.79 
AJ245349-1|CAB44925.1|  124|Homo sapiens immunoglobulin gamma he...    33   0.79 
AM040537-1|CAJ13445.1|  121|Homo sapiens immunoglobulin heavy ch...    30   7.4  
AF359364-1|AAK66977.1|   68|Homo sapiens immunoglobulin heavy ch...    29   9.8  

>AJ245360-1|CAB44936.1|  124|Homo sapiens immunoglobulin gamma heavy
           chain variable region protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.79
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 409 GDYYCLSDS-EGRIIAKHDIIQNNLSLFTIDLFVESFAGFFCVINI 543
           GDY  LSDS EGR     D  +N +SL    L VE  A ++C  ++
Sbjct: 55  GDYTYLSDSVEGRFTISRDNSKNTMSLQMDSLRVEDTAVYYCAKDV 100


>AJ245349-1|CAB44925.1|  124|Homo sapiens immunoglobulin gamma heavy
           chain variable region protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.79
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 409 GDYYCLSDS-EGRIIAKHDIIQNNLSLFTIDLFVESFAGFFCVINI 543
           GDY  LSDS EGR     D  +N +SL    L VE  A ++C  ++
Sbjct: 55  GDYTYLSDSVEGRFTISRDNSKNTMSLQMDSLRVEDTAVYYCAKDV 100


>AM040537-1|CAJ13445.1|  121|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 409 GDYYCLSDSEGRIIAKHDIIQNNLSLFTIDLFVESFAGFFCVINIYERT 555
           G  Y     +GR I   D  +N+L L   +L  E  A ++C  NI  RT
Sbjct: 56  GAIYYADSLKGRFIISRDNAKNSLYLQMNNLRAEDTAIYYCASNISTRT 104


>AF359364-1|AAK66977.1|   68|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 68

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 409 GDYYCLSDSEGRIIAKHDIIQNNLSLFTIDLFVESFAGFFCV 534
           G+ YC++  +GR     D  +N++ L    L  E  A ++CV
Sbjct: 2   GEKYCINSVKGRFTISRDNAKNSVYLQMNSLRAEDTAVYYCV 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,731,162
Number of Sequences: 237096
Number of extensions: 1404939
Number of successful extensions: 9214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9214
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)