Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1912
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    30   0.32 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   4.0  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   5.2  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    26   6.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   6.9  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 184 IFWFRYIGPFVYLIIDFIKLPI 119
           I+W +Y+GPF YLI+ +  L I
Sbjct: 336 IWWLKYLGPFSYLILYYFFLDI 357


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 113  YHRCQTKIQAIYQSLFKHCLCRNIKNMILWF 21
            Y +C +KI A Y+SLF+       + +I+WF
Sbjct: 2165 YRQCPSKIPAFYRSLFR-------RRLIMWF 2188


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +2

Query: 386 VSVERDSDPMVDSAKTALARASVGKLSQFEGASSPIRPGVTE*TLRLPANRHGKSNISNY 565
           + V R    M  + + A+ R   G+L    G SSP+R       + LP   HGK+    +
Sbjct: 724 IRVMRVKAVMPANNRAAVLRIYAGRL----GVSSPVRTAPHPMAMSLPFVHHGKNKALEF 779

Query: 566 FAAEP 580
               P
Sbjct: 780 VTRHP 784


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 459 LPTLALARAVFAESTIGSESRSTETIRRATQWAVSMSLVIY 337
           L  L +  A+F  STIG   R  +  RR  QWA ++  +IY
Sbjct: 592 LVQLNIPFAIFP-STIGQVRRQLQQGRRLYQWARNIHYLIY 631


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 304 HARGLVPSKQQAKDLVKYMKIGFNSVPRNKLQ*QNLRR 191
           H +G +P+    KD  +Y+K  FN  P  KL+ +  R+
Sbjct: 4   HVKGQLPNAHFHKDWQRYVKTWFNQ-PGRKLRRRQARQ 40


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 59  CLCRNIKNMILWFITLE 9
           C+C ++KN+ L F+TLE
Sbjct: 899 CICESMKNVKLDFVTLE 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,200
Number of Sequences: 5004
Number of extensions: 67471
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)